| New model in OGS2.0 | DPOGS213596 |
|---|---|
| Genomic Position | scaffold66:+ 277870-280963 |
| See gene structure | |
| CDS Length | 1500 |
| Paired RNAseq reads | 1223 |
| Single RNAseq reads | 3413 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA011662 (6e-89) |
| Best Drosophila hit | CG1677 (7e-17) |
| Best Human hit | zinc finger CCCH domain-containing protein 18 (1e-12) |
| Best NR hit (blastp) | PREDICTED: similar to conserved hypothetical protein [Tribolium castaneum] (1e-40) |
| Best NR hit (blastx) | PREDICTED: similar to conserved hypothetical protein [Tribolium castaneum] (5e-46) |
| GeneOntology terms | GO:0005634 nucleus GO:0008270 zinc ion binding GO:0003676 nucleic acid binding GO:0071013 catalytic step 2 spliceosome GO:0000398 nuclear mRNA splicing, via spliceosome GO:0071011 precatalytic spliceosome |
| InterPro families | IPR000571 Zinc finger, CCCH-type |
| Orthology group | MCL23976 |
Nucleotide sequence:
ATGGATTCTGAAGATTCTCGTGATGCCACTGGAGATGGCCGTTCATCATCCAGCAGTAGT
AGCTCAAGTTCCAGGAGTCGCCGTAGTTCATCATCAGATAGTTTTAAAAAGAATCCCAAG
TCCCCACCTCAAAGACCCAAATCTCCAAAATCTAATGGACCCCGTTTCCACTCCCCAGGG
AGTCACTCTCAATCACCTCACAGAAGTTCTGACAAAGCCCCACAGTCACAAGATAACTTA
AGTGGTGCACATTCAGACATTAATTCACCAGAGAATTCAATGCCTGCTTCTCCTTTTGGG
CCAAAATCTCCTGATGCCCCTAAGTCTCCAAGTGAAGTGGGTTCCAATATAGGATCTCCC
GAACAACCTGAGCACTATTCATCCAATCGTTCAGGAGGTGAGGGTCCTAAAACTCCTCAA
TCTCCTGCTAGTTCAGTAAAATCTGCTCCAGGTTCACCAACTAGTAGATCCCAACCAATA
TCACCCGACTCAGCATCCCAAATCACAAGTCCATCTAGATATCGTGATTCTTGGTTGCCT
TCCTACAATAATCGTAGAGCATCTCCTCATTCCTCCCCTACTGCTTCTCCTGTTAAGAAA
AATGACTGGAGTCCTAAAGAGAATTGGCGACGGCATACAAAGGCAGAACAGAAAATGGTT
CCCACTCCAAGAAATAGAAGTAGGTCGGATTCAAGTCGATCCAGTCAAAGTTCATCATAC
AATAAGAGAACTAACACTAAAGATCCCGCCACCGAAGAAATATCTGATGGGGAAATGGAA
TCGGATCAAGAGGACAATAAGTCCAGGCGCAAGTCTCCGGGCAGCGAGAAACATGAAAAA
GAGAATAATATCAGTCATGAAGATTTAAGTGACGTGTCAGACGAGGACTCCGACACACAA
GATGACAATAAAGACATAAAGACCAAACCAAACCCCCCATCCACTGATAAGAAAAATGAA
ATTTTTAATGGTAACGATGGTGAAATTTCACAGCTGTCTTCTATTTCGGAGGGTGGAAAA
AATGCTAAAAAAACAGAAAAGGTGTCACAAGAAAAAACAAACAATACAGAAGACGGCGAG
GAACAGTTGGACTTTGAAGCTGAAGAAGGAGAGTGTATTGAAACGACAAAGACAAAAGAT
CAATCTAACGGGGATGTTGATAGTCAGAGCAATGAGAAAGAGGAAGTGAAAGCGGGTCGT
AGATCGCGAGGTTCTTCTCTAGAAGAGGGCGAGGTGTCTGACGAGGCAGAGCGTCGGCCC
GAGGAGAGTGAACCGCGACCGGTCTGCAGATTCTTCTCACGGGGCGCCTGCACCTGGGGA
GTCAGCTGCAGGTTCCTGCATCCCGGTGTAACGGACAAAGGTAACTACAACATGTTTGAT
GTGGTCCGAGGTGTACCCAGTGGAACCATTCCCGCGCCGAGGGACTCCGCCCCGCCAGAG
TCGGCCTGGGAAAGGGGACTGCGGACTGCCAAAGAAGTAAGGATACTGATAAGATTTTGA
Protein sequence:
MDSEDSRDATGDGRSSSSSSSSSSRSRRSSSSDSFKKNPKSPPQRPKSPKSNGPRFHSPG
SHSQSPHRSSDKAPQSQDNLSGAHSDINSPENSMPASPFGPKSPDAPKSPSEVGSNIGSP
EQPEHYSSNRSGGEGPKTPQSPASSVKSAPGSPTSRSQPISPDSASQITSPSRYRDSWLP
SYNNRRASPHSSPTASPVKKNDWSPKENWRRHTKAEQKMVPTPRNRSRSDSSRSSQSSSY
NKRTNTKDPATEEISDGEMESDQEDNKSRRKSPGSEKHEKENNISHEDLSDVSDEDSDTQ
DDNKDIKTKPNPPSTDKKNEIFNGNDGEISQLSSISEGGKNAKKTEKVSQEKTNNTEDGE
EQLDFEAEEGECIETTKTKDQSNGDVDSQSNEKEEVKAGRRSRGSSLEEGEVSDEAERRP
EESEPRPVCRFFSRGACTWGVSCRFLHPGVTDKGNYNMFDVVRGVPSGTIPAPRDSAPPE
SAWERGLRTAKEVRILIRF