| New model in OGS2.0 | DPOGS214927 |
|---|---|
| Genomic Position | scaffold824:- 17731-30714 |
| See gene structure | |
| CDS Length | 3858 |
| Paired RNAseq reads | 15411 |
| Single RNAseq reads | 35543 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA000204 (1e-39) |
| Best Drosophila hit | Sin3A, isoform A (3e-115) |
| Best Human hit | paired amphipathic helix protein Sin3a (3e-110) |
| Best NR hit (blastp) | Paired AMPhipathic helix protein Sin3A, putative [Pediculus humanus corporis] (0.0) |
| Best NR hit (blastx) | PREDICTED: similar to transcriptional co-repressor Sin3A [Tribolium castaneum] (3e-162) |
| GeneOntology terms | GO:0005634 nucleus GO:0045449 regulation of transcription GO:0003700 sequence-specific DNA binding transcription factor activity GO:0003702 RNA polymerase II transcription factor activity GO:0045892 negative regulation of transcription, DNA-dependent GO:0007422 peripheral nervous system development GO:0000785 chromatin GO:0016481 negative regulation of transcription GO:0007346 regulation of mitotic cell cycle GO:0003712 transcription cofactor activity GO:0016564 transcription repressor activity GO:0016580 Sin3 complex GO:0000791 euchromatin GO:0007517 muscle organ development GO:0048666 neuron development GO:0048813 dendrite morphogenesis GO:0005737 cytoplasm |
| InterPro families | IPR003822 Paired amphipathic helix IPR013194 Histone deacetylase interacting |
| Orthology group | MCL11110 |
Nucleotide sequence:
ATGCTGTCTGTGGGCGGAAACTTCAGCCGTCCACGTGGTAATCCGCCCGTCATCAACTAT
CTGAAGGCTAACACTGTTCAGTACGCGCCGCCCAAACCACAGGCGCCAAGACTCAAGCTG
GTGAGCCAACAGCCAGCCTTAATCCCCGGCCGTCAATCTCCGCTGGGAGGTCCCCTGCCA
GCACCTCCAGCTGCTCAGTTCCAGCGGTTGAAGGTGGAGGATGCCTTATCGTACTTGGAC
CAGGTCAAGTACAAGTTCAACACACAGCCTCAGGTCTACAATGACTTTCTTGATATAATG
AAGGAATTCAAGAGTCAGACGATCGACACGCCCGGCGTCATCACCCGGGTATCGAACCTG
TTCAAGGGACATCCGGAGCTGATCGTCGGCTTCAACACCTTCCTACCGCCGGGGTACAAG
ATCGAAGTACAGAGTAACGGACAGGTCTCAGTGTCGATGCCATCGCCCACTGGTGCAGGC
TGTCCGCCAGCAGGCGCCGTGGGCGTGGGAGTGGGCGCCAGTGGTGGCGTGGGCGTGGGC
GGTGGTGGTAACGCCGTTGGCGTGACCGGTGCCGGTGTCATGATGGGTGTCCATCACCCT
CCACCCCAACCACAACTAGTCCATCTGCTGCCTGTACCACAGTCTGTCAGTAACGCGATC
GTTCACAACCTGTCTGTGAATGCCACGGCTACCAACACCCTGCATCATATATCACAAGCT
CATCAGCAGATCGAGGCTGCAGCCATACACCATCCTCCAGGTTCAGCAGCTAATGCCAGC
GCCAGTCACGCTGCTGCAGGTCAACCGGTGGAGTTCAACCACGCTATTGAATACGTCAAT
AAGATTAAGTCTCGTTTCTCGCGCCAACCGGACAAGTACAAGCGTTTCCTTGAGATATTA
CACGCGTATCAGAGGGGACACCGGGATCTCAAGGAACCCCACGCCAAGCAGCAGACGGAA
CAGGAGGTGTACGCACAGGTGGCGAAATTATTTGAGAAGCAAGACGACTTGCTGGCCGAG
TTTGGTCAGTTCTTACCTGACGCGAAGGCTGTGACCAAGCCGACGCCCATACCACCTCAT
TCGAGATCACCACCGCCGCAGGTCCGTATGGAAGCTGAACTAGACCGCTTCCCCAGCTCG
ACGCCGTCATCCCCTCCACATGGGGCCGTGACACACGTGACGCACGCGACACACGTGACA
CCAGCCCCTACACCGACACACGCGGCACACGTGACTCACGTGACACACGCTCACGTCCCG
CCCCAGCCACATCCAGTACACACACAGCCGCCTGCGCCCAAACACACCAGCGCAGCAGTA
GTCACGCCACAACATCACCTCAAACGGTCGCCCAGCTTCACGTCAACAACACAAATAAGT
TCAGGTGCGCCAGCAGCTAAGCGAGCCAGGGTCCGTGATCTATCAGTGTCCGAGGCTGGT
AAAATGGCCGCCGCCAGTGACTATTCGTTCTTCGACCGTGCTAGGAAGGCCTTAAGATCG
CAGCATGTATATGACAACTTCTTAAGATGTCTCCTGTTATTTACAAACGAGATAATATCA
TCATCTGAGCTGTTATGTGTGACGGCGCCGTTTCTGTGTCGCCACCCTGAGCTACAGAAG
TGGCTTCAAGACTTTGTGGGACCTGTGTCACCACCACACACACCCACAAACACACATACA
GGTGGATACAACAATAACTTCACAAGTTCAAGCAACCTTCTATACGAACGTACACGTTTA
GGGTCAGAGAGTAAAAATAGATATGAACCCTTGGGTCCACTGGGAGCTCAAATGAGACAC
GAGAGACCTCAAGGAGATGCTGCTATGGATATAGATCTATCGACGTGTAAACGTCTGGGC
ACCTCGTACTGCGCCCTGCCACGGGAAGCAGCCGCTAGGAAATGTTCAGGACGAACACCG
CTCTGCAAGGAGGTACTAAATGACACGTGGGTGTCGTTCCCTACGTGGAGTGAGGATTCT
ACTTTCGTGACATCACGGAAGACTCAATATGAAGAATATATATACCGCTGTGAGGACGAG
AGATTTGAGCTGGACGTGGTCATAGAGACGAACGCAGCAACGATCAGAGTATTGGAAGGA
GCTCAGAAGAAGTTGTCTCGAATGAGTCCAGAAGACGCTGCCAAGTACCGCCTGGACGAC
TGTCTCGGCGGACATTCACCCACCATACACCAGAGGGCGCTCAAGAGGATCTACGGCGAC
AAGGCTGTGGACATTATAGCTGGTTTGAAGAAAAATCCTGTTGTGGCCGTGCCGGTAGTG
CTGAGACGGCTTAAAGCCAAGGAGGAAGAGTGGAGGGAGGCACAGAAGGGCTTCAACAAA
CAATGGCGCGAACAAAACGAGAAATATTATCTCAAGTCCTTAGATCACCAGGGGATAACG
TTTAAGCAGAACGATTTGAAAGCTCTGCGCTCCAAGTGCTTGTTTAACGAGGTCGAAAGT
GCGTTCGCTGTGAGGAAACCCGGGCCGCATCTGTTGAGCGACTACGGCACCAAGTCGAGA
CATGAAGCTATCAAGATAGCCCGTGATGCTGCGGAATTGCTGATACATCACGCTCGCCGA
CAGACCGGCATCCAGAAGGCCGAGAAGAGGCGCATCAAACTCCTGCTGAGGCAGTTCCTG
CCGGATCTCATGGCGCATCCGCGACTTCCGCTCAGCGACGACGAGCATGAAGAAGAAAAG
GAAGAACCAACGAGTCCCGGGAGCCCAGCGGCTGATCAGGCTGACGAGAAGACGACAGTC
AAAAATGAAAAGCAAGAGTCCTCGGAATCCGATAACGCGTCTGATAAAAGTAGCCGCAAC
AACAAAAATGATAAAGAAAACAAACCAAAAAATAACAACACGGAAACTAAAGACAGCACA
AATTCAATAAAACGAAGCATAAGCAATGAGGAGGCCAGCATCAAAATGGAGCTAAAGAAT
GAAAACGATCTCGAAGACGACTACAGAGATCACCCGCCTAACGAGTCCCGTTTCGTGTGT
ACATCATCGTGGTACCTGTTCCTACGGTTGCATGGTGTGTTATGCGCGAGGCTGTGCGGT
GCTAGACAGGCGGCACAGCAGCTGGCTGCGGGTGAAGCAGCACGAGCGTCCACACGACCA
CCCAGCGTGGCGGCCGCGCTGCGACTGAAGCCGACAAATCTACCAGCGGATGCGTCATCT
CCGTCGGAGTACTACAACGCCTTACTGGAGCTGGTTAAAGGTGTCTTAGATGGGAATGTG
GAATCGTCGGCATACGAGGACGCGGCCAGGGAGATGCTTGGTATCAAGGCTTACCCGCTA
TACACACTAGATAAGGTCGTCTCTATCGCTGTCAGACAGCTCCAACATTGTGTGTCTGAG
AGTTGGTCGGTTCGTGCGACCGAGTTGGCATCCCGCGGTCCCCGAGGCCCGCCTTACATC
AGACGAGCGTTGAGAGCTCTCAGACCACACCATACCGCCTTCCTTGTTACATTTTACTTC
GGCGACACATGCAAGGTTGGCTTCGAGCTGATGGAAGCGGCTGGCGAAGGTCGCGCCTCT
CCTCACAGAGACCAACGCTTGTCACCAACACAGTCCCGTCGAGACACGAACGGCGATGCG
TCCGTCCGTCACGGTGGCTGGTCGCCGTATAGTTACGCGCCGATCGCTACCAACAAGCCG
GTGTTCCTGAGGCGGAACGCAAGGCGATCGGGCGCGGGGGCGACGGGGGCGCACACCGCT
AGCGCTCCGCCGGACATCAGCGAAGCCCCCGCCCACGCAAGGAGAAGAAAACCGCCCAGG
TTACACGACCACGACTGCGGAGTCACCAGCGGAGCGAGGTCACTATCACATTGCTACTCG
CACCGACAATTAATCTAA
Protein sequence:
MLSVGGNFSRPRGNPPVINYLKANTVQYAPPKPQAPRLKLVSQQPALIPGRQSPLGGPLP
APPAAQFQRLKVEDALSYLDQVKYKFNTQPQVYNDFLDIMKEFKSQTIDTPGVITRVSNL
FKGHPELIVGFNTFLPPGYKIEVQSNGQVSVSMPSPTGAGCPPAGAVGVGVGASGGVGVG
GGGNAVGVTGAGVMMGVHHPPPQPQLVHLLPVPQSVSNAIVHNLSVNATATNTLHHISQA
HQQIEAAAIHHPPGSAANASASHAAAGQPVEFNHAIEYVNKIKSRFSRQPDKYKRFLEIL
HAYQRGHRDLKEPHAKQQTEQEVYAQVAKLFEKQDDLLAEFGQFLPDAKAVTKPTPIPPH
SRSPPPQVRMEAELDRFPSSTPSSPPHGAVTHVTHATHVTPAPTPTHAAHVTHVTHAHVP
PQPHPVHTQPPAPKHTSAAVVTPQHHLKRSPSFTSTTQISSGAPAAKRARVRDLSVSEAG
KMAAASDYSFFDRARKALRSQHVYDNFLRCLLLFTNEIISSSELLCVTAPFLCRHPELQK
WLQDFVGPVSPPHTPTNTHTGGYNNNFTSSSNLLYERTRLGSESKNRYEPLGPLGAQMRH
ERPQGDAAMDIDLSTCKRLGTSYCALPREAAARKCSGRTPLCKEVLNDTWVSFPTWSEDS
TFVTSRKTQYEEYIYRCEDERFELDVVIETNAATIRVLEGAQKKLSRMSPEDAAKYRLDD
CLGGHSPTIHQRALKRIYGDKAVDIIAGLKKNPVVAVPVVLRRLKAKEEEWREAQKGFNK
QWREQNEKYYLKSLDHQGITFKQNDLKALRSKCLFNEVESAFAVRKPGPHLLSDYGTKSR
HEAIKIARDAAELLIHHARRQTGIQKAEKRRIKLLLRQFLPDLMAHPRLPLSDDEHEEEK
EEPTSPGSPAADQADEKTTVKNEKQESSESDNASDKSSRNNKNDKENKPKNNNTETKDST
NSIKRSISNEEASIKMELKNENDLEDDYRDHPPNESRFVCTSSWYLFLRLHGVLCARLCG
ARQAAQQLAAGEAARASTRPPSVAAALRLKPTNLPADASSPSEYYNALLELVKGVLDGNV
ESSAYEDAAREMLGIKAYPLYTLDKVVSIAVRQLQHCVSESWSVRATELASRGPRGPPYI
RRALRALRPHHTAFLVTFYFGDTCKVGFELMEAAGEGRASPHRDQRLSPTQSRRDTNGDA
SVRHGGWSPYSYAPIATNKPVFLRRNARRSGAGATGAHTASAPPDISEAPAHARRRKPPR
LHDHDCGVTSGARSLSHCYSHRQLI