| New model in OGS2.0 | DPOGS213517 |
|---|---|
| Genomic Position | scaffold271:+ 90664-100943 |
| See gene structure | |
| CDS Length | 3144 |
| Paired RNAseq reads | 1201 |
| Single RNAseq reads | 3372 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA011797 (0.0) |
| Best Drosophila hit | haywire, isoform B (0.0) |
| Best Human hit | TFIIH basal transcription factor complex helicase XPB subunit (0.0) |
| Best NR hit (blastp) | haywire, isoform A [Drosophila melanogaster] (0.0) |
| Best NR hit (blastx) | AGAP012169-PA [Anopheles gambiae str. PEST] (0.0) |
| GeneOntology terms | GO:0005675 holo TFIIH complex GO:0006366 transcription from RNA polymerase II promoter GO:0006917 induction of apoptosis GO:0006283 transcription-coupled nucleotide-excision repair GO:0047485 protein N-terminus binding GO:0008134 transcription factor binding GO:0045944 positive regulation of transcription from RNA polymerase II promoter GO:0008353 RNA polymerase II carboxy-terminal domain kinase activity GO:0000717 nucleotide-excision repair, DNA duplex unwinding GO:0043138 3'-5' DNA helicase activity GO:0033683 nucleotide-excision repair, DNA incision GO:0008094 DNA-dependent ATPase activity GO:0006979 response to oxidative stress GO:0045449 regulation of transcription GO:0003677 DNA binding GO:0016787 hydrolase activity GO:0008104 protein localization GO:0035315 hair cell differentiation GO:0005524 ATP binding GO:0006265 DNA topological change GO:0006289 nucleotide-excision repair GO:0008022 protein C-terminus binding GO:0009411 response to UV GO:0016887 ATPase activity GO:0004672 protein kinase activity GO:0000075 cell cycle checkpoint GO:0009650 UV protection GO:0004386 helicase activity GO:0006281 DNA repair GO:0005634 nucleus GO:0004003 ATP-dependent DNA helicase activity GO:0000166 nucleotide binding |
| InterPro families | IPR001161 Xeroderma pigmentosum group B protein (XP-B) IPR014001 DEAD-like helicase IPR001650 Helicase, C-terminal IPR018607 Chromosome transmission fidelity protein 8 IPR006935 UvrABC complex, subunit B |
| Orthology group | MCL12081 |
Nucleotide sequence:
ATGGGACCCCCTAAAAAGTTCAGGAAATATGACTCCAAAGGTGGAAGCGACAGATCTGGT
AAAAAGAAAAAAGTAGATGAGGAAGTGACAATTGATTTAGTGGATGATGATAACCCTGAA
AGTTCTGGAGTGCCGGGAGCGGCCCTGCAGGATGCTGAGAAAAACGACCAGGTCCCTGAA
GATGAGTTTGGAGCTAAAGATTATAGAAATCAAATGGAACTCAAACCTGACAATGCCAGT
CGTCCGCTGTGGGTGGCTCCTAATGGTCATATATTTCTCGAGTCATTTTCGCCAGTCTAT
AAACATGCTCATGACTTTTTAATTGCTATCGCTGAGCCAGTGTCAAGGCCTCAGCACATT
CATGAGTATAAATTAACAGCGTACAGTTTATATGCAGCAGTTTCTGTGGGTTTGCAAACA
AATGACATAATTGAATATTTACAACGTCTCAGTAAGTGTAACGTTCCGGCCGGTATCATA
GAATTCATCACACTTTGTACTTTGTCTTATGGCAAAGTTAAGCTTGTACTGAAACATAAC
AGATATCTAGTGGAGAGTAAGCACGTGGATGTTCTTCAGAAGCTCCTCAAGGATCCCGTG
ATCCAGCAGTGTAGACTGAGACGAGACGGAGATGAAGAACTGGTTACCTCCGCTCTACCT
ACTACGGCGCCCGCACCGCCCGGGACCGCAGTTAAGACTGGTCGGGTGATACAAAAACGC
TGCATCGAGCTGGAGTATCCGCTGCTGGCGGAGTACGACTTCCGCAACGACGCCGTCAAC
CCTGACATTAACATTGATCTAAAGCCTACAGCAGTGCTGCGACCCTACCAGGAGAAGAGT
CTCAGGAAGATGTTCGGAAACGGCCGAGCGAGGTCAGGTGTGATAGTGTTGCCGTGCGGC
GCGGGCAAGTCCTTGGTGGGCGTGACGGCCGTGTGCACGGTCCGCAAGAGGGCGCTGGTG
CTGTGCAACTCAGGAGTCTCCGTGGAACAATGGAAACAGCAGTTCAAGTGTTGGTCCACC
GCCGACGACAGTATGATATGCAGGTTCACGTCGGAGGCCAAGGACAAGCCGATGGGCGCC
GGCATCCTGATCACGACCTACTCCATGATAACGCACGGCCAGCGCCGCTCGTGGGAGGCC
GAGCAGACCATGAAGTGGCTACAGGCGCAGGAGTGGGGGCTCGTGGTGCTGGACGAGGTG
CACACCATCCCCGCCAAGATGTTCCGCCGGGTGCTCACCATAGTGCACTCACACGCCAAG
CTGGGTTTGACGGCGACGCTACTCCGCGAGGACGACAAGATAGCCGACCTGAACTTCCTG
ATCGGCCCCAAGCTGTACGAAGCCAACTGGTTGGAGCTGCAAGCCAACGGCTACATCGCC
AGGGTCCAGTGCGCCGAGGTCTGGTGTCCCATGACGCCCGAGTTCTACCGGGAGTACCTC
GTGCAGAAGATCAATAAGAAAATGTTGCTGTATGTAATGAACCCGTCCAAATTCCGCGCC
TGCCAGTTCCTCGTCCGCTACCACGAACGCCGCGGGGACAAGACCATAGTGTTCTCGGAC
AACGTGTTCGCCCTCAGACACTACGCCGTCAAAATGAACAAGCCCTACATCTACGGCCCG
ACGTCCCAGAACGAGAGGATACAGATCCTTCAAAACTTCAAGTTCAACCCTAAAGTTAAC
ACGATTTTCGTCAGCAAAGTCGCCGACACCAGCTTCGACCTGCCCGAGGCGAACGTTCTC
ATACAAATCTCCTCGCACGGCGGCTCTAGGAGACAAGAAGCGCAACGTTTGGGTCGTATA
TTAAGAGCCAAGAAGGGTGCACTAGCGGAGGAGTACAACGCATTTTTCTACACACTAGTA
TCACAGGATACTTTGGAGATGGCGTACAGTCGCAAGAGACAGCGGTTCCTTGTGAACCAG
GGTTACAGTTACAAGGTTATTACAGAATTGAAGGGCATGGACCAGGAGCCCGATCTGTTG
TACGGAACTCGGGAGGAACAAGGGATGCTGCTGCAACAAGTTCTCGCGGCGTCAGAGACG
GACTGCGAGGAGGAGAGGGAGGGTGGAGCGGGCGGTGCGGGGAGCGCGGGCGGGGCGAGG
CGCACCGCGGGGTCATTGGCCTCGCTGGCGGGCGCCGACGACGCTCTGTACCTGGAACAC
AGGCGCTCCTCGCACCACAACAAGCACCCACTGTTCAAGAACGAGAACGAGACGGGCGGA
ATATCAGAGTGGGCGATAGTGGAACTGCAGGGTCTCGTGCAGGTGGAGGGAGACGATCGC
GGCGGACCCGCGGTGGTGGGGGACCTGCATTACTTCAAAAGAAACCGACATCCCGTGCTC
GTGCTCGGCCACCACGTGCTCACCGGCAAGGAGGTCAAGCTGGAGCAACCTATGGCAGTC
ATGGAGAAGACTGTGGACGGAGGTCAAACTTCGTACAGAGTCAAGGCGATCGTTAGAAAG
AAACTACTCTTTAAATCGAGACCTAAACCCATCATATCAAACGAGGAAAGTGAGCGAAGT
CTTCCCCGGTGCGAGGACGGCGAGGCGTGCTCGGTGTTGCTGCGCCGCTACTGGCGCCCC
CCGGCCCTGGTGCGGCTCTGCCGGTGCTCCCGACGCACGCGCTGCGATAAGATCGCGTCA
GGAGACAGACTGGTGGAACTGAACAACCGATCGGACTTGCAGGTGCGAGACAATATCACT
CTCAAAGTGGTTGTAAACCGGCGTGAATGGCCGGAGTGTTCCATCAACGAAGCGCCTCTC
AAGATCGAAACAGCGTACGAGCGCATGAGTCCCGATGAGATCGAACTATTGCACCGCCAG
AGCATACAGCTCGCGCCGCCGAGGATACGCCTCCGGTGCCTTTGCCCGAAACCGAACTAT
TGGAAATTAAAAACCGAAGACAGCGACACAAACCTAACGTATCGCTGCTCGTCTCTGCCG
CTCTGTAAAACCGGTGACGTCTGCGGGAACGTGGACGACGTCCTGCTATCTCTGTATCAG
TCGTGCCTGTGTCCCAAAAACCACATCTGCGTGCACAGCGGCGGAAGAACGCAGATCCAG
ATCTCGGAGCCGCTGTATCGAGGGAGGGGCTGGCGTGCCCGCTGTCAAGCTCTAAGTGAC
GAGGATAGCTACGAGGATTACTGA
Protein sequence:
MGPPKKFRKYDSKGGSDRSGKKKKVDEEVTIDLVDDDNPESSGVPGAALQDAEKNDQVPE
DEFGAKDYRNQMELKPDNASRPLWVAPNGHIFLESFSPVYKHAHDFLIAIAEPVSRPQHI
HEYKLTAYSLYAAVSVGLQTNDIIEYLQRLSKCNVPAGIIEFITLCTLSYGKVKLVLKHN
RYLVESKHVDVLQKLLKDPVIQQCRLRRDGDEELVTSALPTTAPAPPGTAVKTGRVIQKR
CIELEYPLLAEYDFRNDAVNPDINIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCG
AGKSLVGVTAVCTVRKRALVLCNSGVSVEQWKQQFKCWSTADDSMICRFTSEAKDKPMGA
GILITTYSMITHGQRRSWEAEQTMKWLQAQEWGLVVLDEVHTIPAKMFRRVLTIVHSHAK
LGLTATLLREDDKIADLNFLIGPKLYEANWLELQANGYIARVQCAEVWCPMTPEFYREYL
VQKINKKMLLYVMNPSKFRACQFLVRYHERRGDKTIVFSDNVFALRHYAVKMNKPYIYGP
TSQNERIQILQNFKFNPKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRI
LRAKKGALAEEYNAFFYTLVSQDTLEMAYSRKRQRFLVNQGYSYKVITELKGMDQEPDLL
YGTREEQGMLLQQVLAASETDCEEEREGGAGGAGSAGGARRTAGSLASLAGADDALYLEH
RRSSHHNKHPLFKNENETGGISEWAIVELQGLVQVEGDDRGGPAVVGDLHYFKRNRHPVL
VLGHHVLTGKEVKLEQPMAVMEKTVDGGQTSYRVKAIVRKKLLFKSRPKPIISNEESERS
LPRCEDGEACSVLLRRYWRPPALVRLCRCSRRTRCDKIASGDRLVELNNRSDLQVRDNIT
LKVVVNRREWPECSINEAPLKIETAYERMSPDEIELLHRQSIQLAPPRIRLRCLCPKPNY
WKLKTEDSDTNLTYRCSSLPLCKTGDVCGNVDDVLLSLYQSCLCPKNHICVHSGGRTQIQ
ISEPLYRGRGWRARCQALSDEDSYEDY