| New model in OGS2.0 | DPOGS210824 |
|---|---|
| Genomic Position | scaffold908:- 42004-47887 |
| See gene structure | |
| CDS Length | 1605 |
| Paired RNAseq reads | 1376 |
| Single RNAseq reads | 3463 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA007140 (0.0) |
| Best Drosophila hit | cryptochrome (4e-170) |
| Best Human hit | cryptochrome-1 (2e-103) |
| Best NR hit (blastp) | cryptochrome [Danaus plexippus] (0.0) |
| Best NR hit (blastx) | cryptochrome [Danaus plexippus] (0.0) |
| GeneOntology terms | GO:0000060 protein import into nucleus, translocation GO:0005634 nucleus GO:0005641 nuclear envelope lumen GO:0005737 cytoplasm GO:0009882 blue light photoreceptor activity GO:0016564 transcription repressor activity GO:0042752 regulation of circadian rhythm GO:0045892 negative regulation of transcription, DNA-dependent GO:0050660 FAD binding |
| InterPro families | IPR005101 DNA photolyase, FAD-binding/Cryptochrome, C-terminal IPR006050 DNA photolyase, N-terminal IPR002081 Cryptochrome/DNA photolyase, class 1 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold |
| Orthology group | MCL19482 |
Nucleotide sequence:
ATGCTTGGTGGTAATGTCATTTGGTTCCGTCACGGTCTCCGTCTCCACGACAACCCTTCG
CTTCACAGCGCTCTGGAAGATGCAAGCTCACCGTTCTTCCCTATATTCATATTTGATGGA
GAGACAGCTGGTACAAAGATGGTGGGCTACAATCGTATGCGATACCTGCTGGAGGCGCTG
AACGATTTGGACCAGCAGTTCAGGAAGTACGGCGGGAAGCTGCTCATGATTAAGGGGAGA
CCTGATTTAATATTCAGGAGGCTGTGGGAGGAATTTGGTATACGTACGCTATGCTTCGAG
CAGGACTGTGAGCCAATATGGCGTCCGCGCGACGCGAGCGTGCGTGCTCTGTGCCGCGAC
ATAGGCGTGTCGTGCCGCGAGCACGTCGCACACACGCTGTGGAACCCGGACACAGTCATC
AAGGCCAATGGAGGAATACCGCCGCTTACATACCAGATGTTCCTGCATACAGTTGAAATC
ATCGGTAATCCTCCGCGTCCCGTAGACGACGTCGACCTGAACGGCGTCAACTTCGGATCG
CTGCCTGAGAGCTTTTACAGGGAATTCGTTGTCTTTGATAAGGCCCCAAAACCAGAAGAT
CTGGGTGTGTTTCTGGAAAACGAAGATATTCGTATGATTCGCTGGGTGGGAGGAGAGACG
GCGGCCTTGAAGCAGATGCAGGAGAGATTGGCTGTGGAGTACGAGACATTCTGCAGGGGT
TCTTATTTGCCGACCCATGGCAACCCCGACCTCCTTGGACCGCCGATATCTCTGAGTCCA
GCCTTGCGCTTCGGCTGTCTGTCTGTCCGTCGCTTCTACTGGAGTCTCCAGGACCTGTTC
CAGCAGGTGCATCAGGGACGCCTGGCTTCCACTCAGTTTATCACTGGTCAGTTAATATGG
CGGGAGTATTTCTACACCATGAGCGTCAATAACCCCAACTACGCCCAAATGTCGGGGAAT
CCTATCTGCCTGGACATACCGTGGAAGGAACCGGAAAATGACGAGTTACAGAGATGGAAG
GAGGGTCGTACGGGGTTCCCATTCGTGGACGCGGCCATGCGCCAGCTGCGTACGGAGGGC
TGGTTGCATCACGTTGTACGGAACACCGTGGCCTCGTTCCTCACCCGCGGGACCCTGTGG
CTGTCCTGGGAACACGGGCTGCAGCACTTCCTCAAGTATCTGCTGGATGCTGATTGGTCG
GTGTGCGCGGGTAACTGGATGTGGGTGTCGTCCAGTGCGTTCGAGGCCTTATTGGACTCC
GGCGAGTGCGCGTGTCCCGTCAGACTGGGCCGAAGACTGGAGCCCACTGGCCATTATGTA
CGGAGATACGTACCAGAACTGGCTCGGATGCCCGGAGAGTACATTTACGAGCCGTGGCGT
GCCCCGCTCGAGGTGCAGGAGGCTGCGGGCTGTGTCATAGGTCGAGACTACCCCGCGCCG
GTCGTCGACCACACAGCTGCGGCCGCCAGGAACAGGGCCAACATGCAGGAGCTGCGCCGC
CTGTTGGAGAAAGCTCCTCCTCACTGCTGTCCGTCATCTGAAGACGAGGTGCGCCAGTTC
ATGTGGCTTGGAGACGACTCGCAGCCTGAGCTCACCACCACATGA
Protein sequence:
MLGGNVIWFRHGLRLHDNPSLHSALEDASSPFFPIFIFDGETAGTKMVGYNRMRYLLEAL
NDLDQQFRKYGGKLLMIKGRPDLIFRRLWEEFGIRTLCFEQDCEPIWRPRDASVRALCRD
IGVSCREHVAHTLWNPDTVIKANGGIPPLTYQMFLHTVEIIGNPPRPVDDVDLNGVNFGS
LPESFYREFVVFDKAPKPEDLGVFLENEDIRMIRWVGGETAALKQMQERLAVEYETFCRG
SYLPTHGNPDLLGPPISLSPALRFGCLSVRRFYWSLQDLFQQVHQGRLASTQFITGQLIW
REYFYTMSVNNPNYAQMSGNPICLDIPWKEPENDELQRWKEGRTGFPFVDAAMRQLRTEG
WLHHVVRNTVASFLTRGTLWLSWEHGLQHFLKYLLDADWSVCAGNWMWVSSSAFEALLDS
GECACPVRLGRRLEPTGHYVRRYVPELARMPGEYIYEPWRAPLEVQEAAGCVIGRDYPAP
VVDHTAAAARNRANMQELRRLLEKAPPHCCPSSEDEVRQFMWLGDDSQPELTTT