| New model in OGS2.0 | DPOGS202024 |
|---|---|
| Genomic Position | scaffold356:+ 155499-156374 |
| See gene structure | |
| CDS Length | 876 |
| Paired RNAseq reads | 86 |
| Single RNAseq reads | 249 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA009206 (8e-107) |
| Best Drosophila hit | succinate dehydrogenase B (5e-79) |
| Best Human hit | succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial precursor (7e-71) |
| Best NR hit (blastp) | succinate dehydrogenase, iron-sulfur subunit [Pediculus humanus corporis] (5e-86) |
| Best NR hit (blastx) | succinate dehydrogenase, iron-sulfur subunit [Pediculus humanus corporis] (2e-84) |
| GeneOntology terms | GO:0008177 succinate dehydrogenase (ubiquinone) activity GO:0005749 mitochondrial respiratory chain complex II GO:0006099 tricarboxylic acid cycle GO:0009055 electron carrier activity GO:0051536 iron-sulfur cluster binding GO:0006121 mitochondrial electron transport, succinate to ubiquinone GO:0005875 microtubule associated complex |
| InterPro families | IPR001041 Ferredoxin IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site IPR004489 Succinate dehydrogenase/fumarate reductase iron-sulphur protein IPR009051 Alpha-helical ferredoxin IPR012675 Beta-grasp fold, ferredoxin-type IPR012285 Fumarate reductase, C-terminal |
| Orthology group | MCL40395 |
Nucleotide sequence:
ATGCACAGTATTAAGAAAGCAATATGTTCAAAACTGCCATGTTTGATATCAATAAGACTC
TACTCGGGTCCAAAACCAGCAGCTGCCGCGGCTAAAAAGCCTTCGGATCCAAGAAAGGTG
TTTAAAATTTACAGGTTTGGAGGAATTCTAAGTAATGAGAAACCAACATTAAAAAGTTAC
GATTTAGACATCAATACTTGCGGACGGATGGTTTTAGACGCTCTCATTAAAATTAAAGAT
ATGGATCCTACGCTTGTATTTCGAAGATCCTGTCGTGAGGGTATCTGTGGGTCATGTGCT
ATTAATCTTCAAGGTCAAAATTGTCTCGCTTGTATAACTGCAATTCCTTCTGACAAAGTC
ATAACCATACATCCCATTCCTCATATGTATGTCATCAGGGATCTGGTCGTAGATATGACA
CATTTCTTTGATGTTTACAATAGCCTCCGTCCATATTTAATCCGAAACAATTCTGGGGCC
CTCGGAAAATTTCAGTATGCACAAAGTGAGAAGGATAACTCCAAATTAGTTGGGCTGTAC
GAGTGTGTTCTGTGCTCTTGTTGTGCTACAGCTTGTCCTAGTTATTGGTGGAATGGCCGA
CGTTTCATGGGGCCAGCGTCTTTGCTTCACGCATACAGATGGATTATAGATTCTCGAGAT
GAAGAATCCGAACAAAGATTATTTGAACTACGAGATGACTTTAAAGCTTTTCGATGTCAC
ACTATATATAATTGTACTCTGGCATGTCCTAAAGGATTACACCCAGCTCTAGCTATAGCA
AAATTAAAAAGATTAATTTCAGGATTAGATAAAAAACCTTTACCCGAAATGGATCCTATG
AAATTTGCTTCGGGTTCGCTGTCCGGTTGTAAATGA
Protein sequence:
MHSIKKAICSKLPCLISIRLYSGPKPAAAAAKKPSDPRKVFKIYRFGGILSNEKPTLKSY
DLDINTCGRMVLDALIKIKDMDPTLVFRRSCREGICGSCAINLQGQNCLACITAIPSDKV
ITIHPIPHMYVIRDLVVDMTHFFDVYNSLRPYLIRNNSGALGKFQYAQSEKDNSKLVGLY
ECVLCSCCATACPSYWWNGRRFMGPASLLHAYRWIIDSRDEESEQRLFELRDDFKAFRCH
TIYNCTLACPKGLHPALAIAKLKRLISGLDKKPLPEMDPMKFASGSLSGCK