| New model in OGS2.0 | DPOGS215625 |
|---|---|
| Genomic Position | scaffold300:- 40291-43027 |
| See gene structure | |
| CDS Length | 1530 |
| Paired RNAseq reads | 2172 |
| Single RNAseq reads | 5026 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA003685 (1e-132) |
| Best Drosophila hit | Upf3 (1e-34) |
| Best Human hit | regulator of nonsense transcripts 3B isoform 2 (3e-30) |
| Best NR hit (blastp) | Upf3 regulator of nonsense transcripts-like protein B [Bombyx mori] (7e-161) |
| Best NR hit (blastx) | Upf3 regulator of nonsense transcripts-like protein B [Bombyx mori] (6e-143) |
| GeneOntology terms | GO:0000166 nucleotide binding GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay GO:0016246 RNA interference GO:0035195 gene silencing by miRNA |
| InterPro families | IPR005120 Regulator of nonsense-mediated decay, UPF3 IPR012677 Nucleotide-binding, alpha-beta plait |
| Orthology group | MCL31013 |
Nucleotide sequence:
ATGACTGAGGACCGAGATGTTAAAGATTCGCAAACGGATACAGGCAATAAAACGTTCATA
AATAAGAGTAAGGACAAAAAAGCTAAACCACATCGACCGCTGACAAAAATCATCCTCCGT
CGGCTGCCACCAACGATGACAGAAGAAGCTTTTCTAGAACAAGTCTCTCCTATTCCTGAA
CACGATCATTTTTATTTCGCCAAACCCGACAACTCTCTTGGAAACAATGTGTATTCAAGA
GCCTATATAAATTTTGTGAATGTCGACGATATTTACCTATTTAGAGATAAGTTTGATGGA
TACGTATTTCTTGACGAAAAAGGTGTTGAATATGTAGGCATTGTGGAATATGCGCCTTTT
CAAAGGATCCCTAAGAAGAAAAAGAAGAAGGATCCCAAGTGTGGTACTATAGAAAGTGAC
CCAATCTATCAGGAGTTTGTGGAGAATTTGAGTAAAGAACAAGAGACTGATAATCAGCCT
AAATTGGAATACTCCTACCCTGTGAATGATAATAACGATAAAAAGAATCAATCAACACCC
TTACTGGAGTATCTTGCTGCTCGGAAGCAAGATAAGAGAGGACGTGATGAAAGACGTAGG
AGAGAAAATGACAAACGTAAAATGAGAATTGAGAGAAAGACGAAAGATTCAACCATAAAG
GAAGAAGACTTTGTCGAGAATGACATAAGGAAAATCAAATCCAGAGAATGGGATAAAGAG
AAAGCTGATACAAAAGAAGATCAAGTTAAGTCTGATAAAGATGTGTTCGAATACAAAACC
TATAGGGAACAGCGTAAAGCCGCCTCCACCAGCGTTATTGACAAGAAGAAGAAATTGGAT
GTAGACAAAAAAGATTACAGCAAAGATGACGAACAGTTAGATGGTTACGATAAATATAAA
AAAGAAAAGCGCACAGAGAAAGTTAAAGAGTCACCGCGAGAGACGAAAAGCAAGAAATAC
AGTGACACCAGAAAGGAGAGATTGAAGCAGGCGGAGATGGGAAAGACGGAGAAACAAACA
GCAATCAATAAGATCATATCGTCAGAAGGGAAAAGTAAATCACTCAATCATGACGACATC
AAACCTTTCACTCAGCTACCTCAAGTGAAAACTGATGATCTGACCAAGATCATAGAAGAT
ATGGATCGAAAAATTAAATTAGACGAAGCTGACTCTAAAACTTTTGATAAGAACGACAAA
GTAGAGCCGGAACCACAGGATGCGGAGGATGTTGCTATAACGAGACGCAACAGTCTAGAT
TCAGGGGACATTTCAAGGAAGGACGAGTCTACACTGAAGAGACAGAAGTCTCTAGACGAT
AGGAGCAAATCTACAGACAGAGAGGGATCAGAAGAGAAAGAGAAAAGTGAGAGTGGAGAT
AGACGCACCGAGAGAAGAATAAGGAATAAGGACCGTCCGAGTCTTGTTATATATCAGCCG
GGTATGGGAAAGTTCAGTAAACAGCGGCTCGCTAAAGAAAAGGACGTTCCATCAACAAAA
ACAGTCTGCGATGAAAAGAGGGACACTTGA
Protein sequence:
MTEDRDVKDSQTDTGNKTFINKSKDKKAKPHRPLTKIILRRLPPTMTEEAFLEQVSPIPE
HDHFYFAKPDNSLGNNVYSRAYINFVNVDDIYLFRDKFDGYVFLDEKGVEYVGIVEYAPF
QRIPKKKKKKDPKCGTIESDPIYQEFVENLSKEQETDNQPKLEYSYPVNDNNDKKNQSTP
LLEYLAARKQDKRGRDERRRRENDKRKMRIERKTKDSTIKEEDFVENDIRKIKSREWDKE
KADTKEDQVKSDKDVFEYKTYREQRKAASTSVIDKKKKLDVDKKDYSKDDEQLDGYDKYK
KEKRTEKVKESPRETKSKKYSDTRKERLKQAEMGKTEKQTAINKIISSEGKSKSLNHDDI
KPFTQLPQVKTDDLTKIIEDMDRKIKLDEADSKTFDKNDKVEPEPQDAEDVAITRRNSLD
SGDISRKDESTLKRQKSLDDRSKSTDREGSEEKEKSESGDRRTERRIRNKDRPSLVIYQP
GMGKFSKQRLAKEKDVPSTKTVCDEKRDT