| New model in OGS2.0 | DPOGS200441 |
|---|---|
| Genomic Position | scaffold451:- 26767-27589 |
| See gene structure | |
| CDS Length | 351 |
| Paired RNAseq reads | 181 |
| Single RNAseq reads | 654 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA008899 (2e-55) |
| Best Drosophila hit | LSm7 (4e-41) |
| Best Human hit | U6 snRNA-associated Sm-like protein LSm7 (3e-41) |
| Best NR hit (blastp) | U6 snRNA-associated Sm-like protein [Bombyx mori] (2e-54) |
| Best NR hit (blastx) | U6 snRNA-associated Sm-like protein [Bombyx mori] (6e-54) |
| GeneOntology terms | GO:0017070 U6 snRNA binding GO:0005515 protein binding GO:0030529 ribonucleoprotein complex GO:0000398 nuclear mRNA splicing, via spliceosome GO:0005634 nucleus GO:0008380 RNA splicing GO:0003723 RNA binding |
| InterPro families | IPR001163 Like-Sm ribonucleoprotein (LSM) domain IPR010920 Like-Sm ribonucleoprotein (LSM)-related domain IPR006649 Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type IPR017132 U6 snRNA-associated Sm-like protein LSm7 |
| Orthology group | MCL12508 |
Nucleotide sequence:
ATGGCTTCAAAAGAAGGAGATAAAACTAAATCAAGTCAAGGTGGTGGCGATAATAAAGAA
AAACGTAGAAAAGAATCTATTTTAGATTTAAGTAAATATCTTGAGAAATGTATTCGTGTT
AAATTCGCTGGCGGACGGGAAGCGGCGGGAATTCTTAAAGGATACGACCCTCTATTAAAC
TTAGTGTTAGACAATACAACAGAATTTCTTAGAGATCCAGATGACCCATATAAGCTTGTG
GACGACACAAGGGCATTAGGGCTTGTGGTGTGCCGAGGCACATCTGTAGTTTTAATCTGT
CCAATGGATGGAATGGAGGCAATACCAAACCCTTTTATAACACAAGAGTGA
Protein sequence:
MASKEGDKTKSSQGGGDNKEKRRKESILDLSKYLEKCIRVKFAGGREAAGILKGYDPLLN
LVLDNTTEFLRDPDDPYKLVDDTRALGLVVCRGTSVVLICPMDGMEAIPNPFITQE