| New model in OGS2.0 | DPOGS203403 |
|---|---|
| Genomic Position | scaffold6:+ 978929-983747 |
| See gene structure | |
| CDS Length | 2688 |
| Paired RNAseq reads | 5002 |
| Single RNAseq reads | 12694 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA013328 (0.0) |
| Best Drosophila hit | Tudor-SN (0.0) |
| Best Human hit | staphylococcal nuclease domain-containing protein 1 (0.0) |
| Best NR hit (blastp) | tudor staphylococcus/micrococcal nuclease [Bombyx mori] (0.0) |
| Best NR hit (blastx) | tudor staphylococcus/micrococcal nuclease [Bombyx mori] (0.0) |
| GeneOntology terms | GO:0016788 hydrolase activity, acting on ester bonds GO:0003676 nucleic acid binding GO:0004518 nuclease activity GO:0016246 RNA interference GO:0005515 protein binding GO:0016442 RNA-induced silencing complex GO:0005737 cytoplasm |
| InterPro families | IPR016071 Staphylococcal nuclease (SNase-like), OB-fold IPR006021 Staphylococcal nuclease (SNase-like) IPR018351 Tudor subgroup IPR016685 RNA-induced silencing complex, nuclease component Tudor-SN IPR002999 Tudor domain IPR008191 Maternal tudor protein |
| Orthology group | MCL15470 |
Nucleotide sequence:
ATGAGTGCTCCAACACCTGCCCCTGCTTATAAAATTGGAATTGTAAAGCAGGTATTATCC
GGAGATACCATCGTTATAAGGAGACAGCCACAAGGAGGTCCCCCGCCAGAGAAAGTGATC
GCCCTTTCAGGCATCACTGCACCGAAACTAGCGCGTCAGAGAACTGCCAACAATGACTCT
GAAACAAAAGACGAGCCGTTTGCATGGGAAGCAAGAGAGTTTTTGAGAAAAAAGTTGGTC
GGTAAGGAAGTCATCTTCACCGCTGAGAAACCTCCCAACTCTGCTACTCGGGAATATGGA
TCTGTTTGGGCTGGGAAGGATCCTACTAAAGATGAAAACATGACGGAAGCCTTGCTAGCG
GAGGGTTTTGTTAAAGTAAGAGAAGGCGGACGTAACATCCCTCAGTTGAAGAGACTCGTT
GAAATCGAAGAAACAGCCAAATCCCAAGGCAAAGGTATTTGGGGAACTGACTTGCAGAAT
CATGTTCGTGACATAAAATGGAGTGTGGAAAATCCGAAACAATATGTGAACAAATTTAAT
GGAACACCTATAAAAGCTATAATAGAATATGTAAGAGATGGATCAACTGTGAGACTTTGT
CTGCTGCCGGACTACACACCTGTAACGCTCATGCTATCAGGAATTAGATGCCCAGCTGTA
AAGCAGGACGGTGATTCTGAGCCTTATGCCGAGGAAGCCAGATTCTTCCTGGAATCCAAA
TTGCTTCAGAAGGATGTTGAGGTGGTCCTGGAATCTGTAAACAACAACAATTTTGTTGGA
ACAATTCTACATCCACAAGGAAATATTGCTGAAGCTTTGCTCAGACAAGGTTTCGGTAGA
TGCGTAGATTGGTCCCTCGCTGTCATGAAATCTGGTGCTATGACACTGAGACAAGCTGAG
AAGGCAGCTAAAGAAGCTAAACTTCGCATTTGGACTAACTATGTCAGTACGGCACCCATC
ATCCCTGCTAAGGATAAAGAGTTCACAGCCACTGTAATGGAAGTTGTCAATGGAGATGCA
CTCGTAGTAAAAATGCCATCTAATGTCCAAAAGAAAATATTCTTGGCAAGCATTAGACCT
CCACGTGAAAAGAACAGCCCAGATGAAGAGGGCAAGCAGTCACCCAGGCCTAAGGGATTC
AAACCGCTGTATGACATACCTTGGATGTATGAAGCACGTGAATTCCTCAGAAAGAAACTC
GTTGGAAAGAAAGTTAATGTCACAATAGATTACATCCAGCCAGCAAAAGACAATTTCCCT
GAAAAAACTTGTTGCACTGTTATGGCAGGCGGAATTAATATTGCAGAGGCCTTGGTCAGC
AAAGGCTATGCCATAGTTGTCAGATACAGAAATGATAATGATCAAAGGAGCTCTCATTAC
GATAAGTTGCTAGAAGCCGAACAGAAAGCTATGAAGGCTAATCTCGGAGTATACGCCAAG
AAAGATATACCGACCCATCGCATACAAGACACAAGCGGGGACTCCGCTAAGGCCAAAAAG
TTCTTCCCGTTCTTAAAGAGAGCCCAGAAAACCGAAGCGGTCGTTGAATTCGTTGCGAGC
GGCTCTCGTATGAGGCTCTACGTGCCCAAGGAATCCGTGCTTGTAACATTCTTACTGGCT
GGCATCAATTGCCCAAGAGGTGCTCGCCCCGCTATCGGCGGCGGCGGCATGCAAGAAGCT
GAACCGTTCGGTGAAGAGGCACTTCAATTCACTAAGGAGAAATGCCTCCAACGCGATGTC
ATTGTGTCTATCGAGGAGATGGACAAAGCCGGCAACTTCATCGGCTGGCTCTGGGTGGAC
AACGAAAACATTTCCATTTCGCTTGTAGAACACGGACTCGCTACTATGCACCACACCGCT
GAGACCTCTGAATACGCGCGCGTTATCAAGAACGCTGAGGAGAGTGCGAGCAAGAAACGC
ATCGGCATCTGGAAGGATTACGTTGAGGTTGAGAAGGAAATTGAAAAGGAACGCAACGCT
CCGATGCAGGACCGTGTCGTGAAATATGAAAAGGTTGTGGTCACGGAAGTCACACCGGAG
GGTACATTCTTCTCACAGAACATGGAGTTAGGAAACAAACTCGAGACCTTGATGGAGAAA
ATTCATCAGGAGTTCACTAACAATGCACCACTGCCCGGATCTTACGTGCCGAGGAGGGGA
CAAATTTGCGCCGCTCGCTTCACACTAGACGACCAGTGGTACAGAGCCAGGGTTGAGAAA
CTCCTTGATGATAAGATGGTTCAAATATTCTACATCGACTATGGAAACAGAGAGGTGGTT
AGCCAAACAAGATTGGCTTTATTGCCGGCGGGCACGGAGTCCGAGCCGCCGTACGCTAGC
GAGTACTCCCTAGTGTGCATCAAGTTCCCCGCGGACGCGGACGATAGACTCGAAGCGGTA
CGAGCCTTCTCTCTGGACACACTCAACAAGAAGCTCTTGCTGAACCTCGAGACACGCGGC
TCTCCACCAGCTGTGACACTCGTCGAGCCCACCACTAACACTGATATTGGAAAGAACCTG
ATCAAGGAGGGTCTGGTGCTGATGGAGAGCATCCGAGACCATCGGCTGAGCGGTCTGGTG
GCCGAGTACCGGCTGGCCCAGGAGCACGCCAAGAGCTCGCGGCTCAACCTCTGGCGGCAC
GGAGACATCACCGAGGACGACGCCGTAGAGTTCGGAGCGCGTCGCTAG
Protein sequence:
MSAPTPAPAYKIGIVKQVLSGDTIVIRRQPQGGPPPEKVIALSGITAPKLARQRTANNDS
ETKDEPFAWEAREFLRKKLVGKEVIFTAEKPPNSATREYGSVWAGKDPTKDENMTEALLA
EGFVKVREGGRNIPQLKRLVEIEETAKSQGKGIWGTDLQNHVRDIKWSVENPKQYVNKFN
GTPIKAIIEYVRDGSTVRLCLLPDYTPVTLMLSGIRCPAVKQDGDSEPYAEEARFFLESK
LLQKDVEVVLESVNNNNFVGTILHPQGNIAEALLRQGFGRCVDWSLAVMKSGAMTLRQAE
KAAKEAKLRIWTNYVSTAPIIPAKDKEFTATVMEVVNGDALVVKMPSNVQKKIFLASIRP
PREKNSPDEEGKQSPRPKGFKPLYDIPWMYEAREFLRKKLVGKKVNVTIDYIQPAKDNFP
EKTCCTVMAGGINIAEALVSKGYAIVVRYRNDNDQRSSHYDKLLEAEQKAMKANLGVYAK
KDIPTHRIQDTSGDSAKAKKFFPFLKRAQKTEAVVEFVASGSRMRLYVPKESVLVTFLLA
GINCPRGARPAIGGGGMQEAEPFGEEALQFTKEKCLQRDVIVSIEEMDKAGNFIGWLWVD
NENISISLVEHGLATMHHTAETSEYARVIKNAEESASKKRIGIWKDYVEVEKEIEKERNA
PMQDRVVKYEKVVVTEVTPEGTFFSQNMELGNKLETLMEKIHQEFTNNAPLPGSYVPRRG
QICAARFTLDDQWYRARVEKLLDDKMVQIFYIDYGNREVVSQTRLALLPAGTESEPPYAS
EYSLVCIKFPADADDRLEAVRAFSLDTLNKKLLLNLETRGSPPAVTLVEPTTNTDIGKNL
IKEGLVLMESIRDHRLSGLVAEYRLAQEHAKSSRLNLWRHGDITEDDAVEFGARR