| New model in OGS2.0 | DPOGS202126 |
|---|---|
| Genomic Position | scaffold326:+ 42028-47575 |
| See gene structure | |
| CDS Length | 2604 |
| Paired RNAseq reads | 185 |
| Single RNAseq reads | 449 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA002771 (0.0) |
| Best Drosophila hit | CG32432 (1e-165) |
| Best Human hit | ND |
| Best NR hit (blastp) | low density lipoprotein receptor-related protein-like protein [Bombyx mori] (0.0) |
| Best NR hit (blastx) | low density lipoprotein receptor-related protein-like protein [Bombyx mori] (0.0) |
| GeneOntology terms | GO:0005575 cellular_component GO:0003674 molecular_function GO:0008150 biological_process |
| InterPro families | IPR000859 CUB IPR002172 Low-density lipoprotein (LDL) receptor class A repeat |
| Orthology group | MCL16276 |
Nucleotide sequence:
ATGGCATATAAAGTTTTGAGGAAAGAATATGCCACTGTGAGATACGGTGGAACGCCACCT
TCAGAGAGACCTTTTTTCAAACTTAGGCCAATGTTATACCCTGTAAACATATCACACGGA
GAAGATACGAACATTGGAAGGACGGCAAAAACTCCAGAGTATTACCTCGGGGATTTGATC
TCGGGGACTTATTGCTCTCGGATCTACAGTGACTGCGATCGTAAAAACTGTAGATTACAA
TCTCCAAACTTCCCCGGCGTTTATCCTAGAAATCTCACTTGTTACTATGCGGTTAGACAG
CACGAAGTGCCTCAAGGAAAACATGCTTTAATAGTTGTGAAACAACCGAATGGCCAGTTA
ATTTCCATAAGAAGTCAAAAGGCTTTGTACGCTCCATCTCAAAATGATAGGGAGACTAAC
GGTAGAGAATTAAAATTTTGGCAACAGTGCGATGAAGTACAGGACTATGTGACAGTTTAT
GATGGCTACACGACAAGAGATCCCGTTATACTGAGGTTTTGCGGTGGTGGAGTTTCAGTT
CCTGAAGCGATATCAAGTGGTCCGGAATTGTTAGTCGAGTTTACTACTTCACCTTTTGGT
ACATTTCTCCAACCGGCTACATCACAGTCTCTACATGGATTCCAATTAGAAGTCGAGGTG
AGATTTGTTGACCAACAATCTCCAACGTACGCAAAAAATAAAAGAGCTTGTGAATTTTGG
ATTCGAGGAACTGGTAGGGGAGTTTTGGAGCATCCACAACATTCACTTCCTCCAAACACA
ACATGCCTTTATCACATGCAAGGAATCGATACTTCCGGTCCATCAGGAAGAAATATTATT
TACAGACGGCAATTTTCTGCACCGCGTTTTAGGGTTTGGTTCTCTGTATTAAAATTTTAT
GTAACAAACGCTATCAATCCCAATTTGCCTGAAGATGAGTATTGTGGGAGCCATTTGAAT
ATATGGGATGGGCCGATGAGGATATCTCCCGGTTGCAGTGATATATTTTGTGATAAAGAA
CGATCGGTTCAAATGTCAAGAGCCACTTCCGCCCAGTCCGTGATAGTTGGACGGCCACCG
ACAAATGCAACCCTCATAGCTAGGTTCTGCCGCGAACGGGCTCCAAGGACTTGTGAACAT
GCGTTATTAAGACGATCTAGAGCATGTGCTAGAACAGAAAGTTTCTTGTCTAAAGGGGAC
TCTTTAACGTTGGAATTGAAGTTAACACAAGGAACAGCACTGAAGCCAGTATTCTTTAAA
GCTCTATACGAGTTTGTAGATTTACATCAAGATGGAGAGGCTTGGGGACGCGGGCCGTGT
TCCAGACGTTTTGCGTCAAGGTCATTCCCTGAAGCGCCACCAGACCCGCCGGTTACCTTC
TCCTCGCCCAGAGATGTCTTTTTGTATGGTCGTGGCGGTGCTAAAAACATCAGTTGCACT
TATCGCTTCGAAGCCAATCCGGGTGAGGTAGTACGTCTCCGAGTGTGGGGCGTCAGGAAT
GGTGGGAGGTTATGCAGGTCCGTGCACTCGGCTCACTCACCATGGTATCGATGCGGAGGA
AATCCTACAGCTGCTGTGAGGATCTTCGAGAGACCATGGAAAGATAATGGAGCTGGTGTT
CCAAGGGACTGTTTGTGCAGCGATGTTCCTGACTATGAATTCACATCCACCTCAGCAGTG
GCTGAACTAAAGTTTGACGTGGTCAACATGTCCGCTGTTGATGACTTCAGATCCTTCGGT
TTTGAGGCATCTGTTGAGTTCGTAAGGCTGAGCAGTGTTTGTGATTCCACCCACCGAGTG
TTTGGAGCTAGTGGGGAATTGAGGCTTTCATACTATCCTCCAATGTCTGAAGATGATCGT
TGTGACTTTCGTCCCTGGTTGATTGATCCAGCACCAGGCAGGTACCTTTATCTCCAAATC
CAAGGCAGCTTGATTAAGGAACCGGAACTCGATAACTTCACGTTACAAAATAATATAACA
GTTGCTCCGGATTTGAGGCATTTATGCCAAACACAGAATCGTATTGCAGTCTACGCTGGA
GGACTTTCTCCGATATTCATATGTCCTAGGCCACCAGTAGAACAGGAAGACGACGTAGTG
GAAGTATTCTCCGAAGGTTGGACTTCGGAAGTGGATGGTTTGTCCAGACACGTGCTGGCG
GCGACGCCCTCCCTCGACCGGTTCGATTTGGAATGGCCACGATCGCTCTCTGTTGAACTG
ATAGCCGTGGAGACTGGCTCCTATTACATTACGTGGTTGGAACTATCGAGGAGACACCCA
AGTCCTCGCGGCGGTGTCTTCGCTCTCTCCGGCGAGTGTACTCATAAATGTTCGTCTTTG
GACGCGTGCATCGAACCAGCTCTTTGGTGTGACGGAGTGCCGCAGTGTCCGCACGGGGAG
GACGAGCGTCTGTCGCAATGCTCTGCTCTCATGAGACTGCCCGCGCATTACGCAGCCGCT
CTGCTCGCGCTCACAGTGCTTGCGGTATTTGCTGTGATAGCGGTGATGCGTTCGTGTCGC
AGACGGCGGTCAGCTTTCCAACAACGTCTCAAGAGTTTATCATCTGATACAGCCATATTC
GACGAGAAAGAAGTGATTTGCTGA
Protein sequence:
MAYKVLRKEYATVRYGGTPPSERPFFKLRPMLYPVNISHGEDTNIGRTAKTPEYYLGDLI
SGTYCSRIYSDCDRKNCRLQSPNFPGVYPRNLTCYYAVRQHEVPQGKHALIVVKQPNGQL
ISIRSQKALYAPSQNDRETNGRELKFWQQCDEVQDYVTVYDGYTTRDPVILRFCGGGVSV
PEAISSGPELLVEFTTSPFGTFLQPATSQSLHGFQLEVEVRFVDQQSPTYAKNKRACEFW
IRGTGRGVLEHPQHSLPPNTTCLYHMQGIDTSGPSGRNIIYRRQFSAPRFRVWFSVLKFY
VTNAINPNLPEDEYCGSHLNIWDGPMRISPGCSDIFCDKERSVQMSRATSAQSVIVGRPP
TNATLIARFCRERAPRTCEHALLRRSRACARTESFLSKGDSLTLELKLTQGTALKPVFFK
ALYEFVDLHQDGEAWGRGPCSRRFASRSFPEAPPDPPVTFSSPRDVFLYGRGGAKNISCT
YRFEANPGEVVRLRVWGVRNGGRLCRSVHSAHSPWYRCGGNPTAAVRIFERPWKDNGAGV
PRDCLCSDVPDYEFTSTSAVAELKFDVVNMSAVDDFRSFGFEASVEFVRLSSVCDSTHRV
FGASGELRLSYYPPMSEDDRCDFRPWLIDPAPGRYLYLQIQGSLIKEPELDNFTLQNNIT
VAPDLRHLCQTQNRIAVYAGGLSPIFICPRPPVEQEDDVVEVFSEGWTSEVDGLSRHVLA
ATPSLDRFDLEWPRSLSVELIAVETGSYYITWLELSRRHPSPRGGVFALSGECTHKCSSL
DACIEPALWCDGVPQCPHGEDERLSQCSALMRLPAHYAAALLALTVLAVFAVIAVMRSCR
RRRSAFQQRLKSLSSDTAIFDEKEVIC