| New model in OGS2.0 | DPOGS210606 |
|---|---|
| Genomic Position | scaffold19:+ 459-1161 |
| See gene structure | |
| CDS Length | 624 |
| Paired RNAseq reads | 53 |
| Single RNAseq reads | 349 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA014411 (1e-14) |
| Best Drosophila hit | xeroderma pigmentosum group A-like (3e-36) |
| Best Human hit | DNA repair protein complementing XP-A cells (6e-37) |
| Best NR hit (blastp) | DNA-repair protein complementing XP-A cells [Culex quinquefasciatus] (2e-54) |
| Best NR hit (blastx) | DNA-repair protein complementing XP-A cells, putative [Aedes aegypti] (2e-46) |
| GeneOntology terms | GO:0006289 nucleotide-excision repair GO:0000166 nucleotide binding GO:0003684 damaged DNA binding GO:0046872 metal ion binding GO:0005634 nucleus |
| InterPro families | IPR009061 DNA binding domain, putative IPR000465 XPA IPR022656 XPA C- terminal IPR022652 Zinc finger, XPA-type, conserved site |
| Orthology group | MCL12339 |
Nucleotide sequence:
ATGCGTCCGGTGGACTCCGGCGGCGGCTTCCTGCTGGAGGCAGAGGAGGACGTGGCGACC
CCCGCGCCCCGCGCCCCGCCTGCGCCCATCGTGCACCGCCCCGACCAGCCGCGCTGCCTT
CACTGCGGCTCGCCCTTTCCGCAGTCCTATCTGTTGGACACCTTCGATTACAACGCCTGC
GACGCCTGCAGGGACGACGAGGACAAACATGAGCTGATCACCCGGACGGAGGCCAAGAGC
GAGTTCCTGCTGAAGGACTGCGACCTGGACGCTCGGCCGCCGCCGCTGAGGTGTGTAAGG
CGCCGAAACCCGCACCGCGCGCGCTTCGCCGAGATGAGACTGTACCTGCGCGTGCAGGTG
GAGCAGCGCGCCCTCGAGGTGTGGGGCTCCGAGGAGCAGCTACGGCGGGAACGGGAGGAG
CGGGACAGGCGCCGAGAGCGAGCCGCCGACACAGCCGCCCGCCGCCGTCTCCGGGCGCTG
CGGATGGACGTGCGCTCCAGCCTGTTCGACCGGACGCGAGCGGCACACGAGCACGTGTAC
GGCCCGGAGACCTACGACCCAGACGAGGACGTGTACCGCCGCCGATGCGAATGTGGACAC
GTGCAGAGTTACGAGAAGATGTAG
Protein sequence:
MRPVDSGGGFLLEAEEDVATPAPRAPPAPIVHRPDQPRCLHCGSPFPQSYLLDTFDYNAC
DACRDDEDKHELITRTEAKSEFLLKDCDLDARPPPLRCVRRRNPHRARFAEMRLYLRVQV
EQRALEVWGSEEQLRREREERDRRRERAADTAARRRLRALRMDVRSSLFDRTRAAHEHVY
GPETYDPDEDVYRRRCECGHVQSYEKM