| New model in OGS2.0 | DPOGS209847 |
|---|---|
| Genomic Position | scaffold15118:+ 784-4612 |
| See gene structure | |
| CDS Length | 882 |
| Paired RNAseq reads | 705 |
| Single RNAseq reads | 1695 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA008073 (1e-146) |
| Best Drosophila hit | CG6015 (6e-114) |
| Best Human hit | pre-mRNA-processing factor 17 (5e-102) |
| Best NR hit (blastp) | PREDICTED: similar to pre-mRNA-processing factor 17 [Tribolium castaneum] (2e-125) |
| Best NR hit (blastx) | PREDICTED: similar to pre-mrna splicing factor prp17 [Nasonia vitripennis] (4e-131) |
| GeneOntology terms | GO:0000398 nuclear mRNA splicing, via spliceosome GO:0005681 spliceosomal complex GO:0071013 catalytic step 2 spliceosome GO:0071011 precatalytic spliceosome |
| InterPro families | IPR019775 WD40 repeat, conserved site IPR011046 WD40 repeat-like-containing domain IPR019781 WD40 repeat, subgroup IPR015943 WD40/YVTN repeat-like-containing domain IPR019782 WD40 repeat 2 IPR017986 WD40-repeat-containing domain IPR001680 WD40 repeat |
| Orthology group | MCL12872 |
Nucleotide sequence:
ATGGTTGCTGCGCCTGAGGAATCAGAGGGGAAAACGGTATTTGAAAATATTAAGAAGAGG
CCTTTAGATAAGAAAAAAAGAGTGAGAAATGACAACCCTGAAGATATAACGGGATTCCTC
GGTCCCTGGGGTGGATATGAAGGAGAAAAGAGAATATTAAAACCAGAAGGCGACGAAGCA
AAGGAAATCGAAGAAATTCTAGCAAAGAGACAGAAGAAAGGGAAGATTGTTGATGATCAG
CCTTTGGAGGAGAAATCTATATTCCATATTGACAAAGGAACGGATTATATGGGCCGATCC
TGGATTGAGGCTCCGAGAAGTGAAACACAATTACGCAGTGACACACCACCAGACAAATGT
TTCCTACCGAAAGCTCATATATTCACGTGGAAGGGTCACACCAAGGGTGTGTCCGCTGTT
CGTTGGTTTCCTCGTACAGCTCACCTCATGTTGTCAGCCGCTATGGATTGCAGGGCAAAG
ATCTGGGAGGTGTATGGTGATCGTCGTTGTATAAGAACATACTTTGGTCACAGACAGGCG
GTTAGAGATGTCAACTTCAATAACACTGGCACACATTTCTTGTCAGCTGCATATGATCGA
TACATCAAGTTATGGGACACGGAGACCGGTGACTGTGTGTCCCGGTTCACCTCCAGGAAG
GTCCCGTACTGTGTGAAGTTCAACCCGGACGAGGACAAACAACACCTCATCGTTGCCGGA
ACCTCAGATAAAAAAATTATATGTTGGGACACTCGTAGCGGTGAGATAGTTCAGGAGTAT
GACCGTCACCTGGGCGCTGTCAACACTATCACCTTCGTGGATGACAACAGACGCTTCGTC
ACCACCTCCGACGACAAAAGTCTAAGGGTCTGGGAGTGGTGA
Protein sequence:
MVAAPEESEGKTVFENIKKRPLDKKKRVRNDNPEDITGFLGPWGGYEGEKRILKPEGDEA
KEIEEILAKRQKKGKIVDDQPLEEKSIFHIDKGTDYMGRSWIEAPRSETQLRSDTPPDKC
FLPKAHIFTWKGHTKGVSAVRWFPRTAHLMLSAAMDCRAKIWEVYGDRRCIRTYFGHRQA
VRDVNFNNTGTHFLSAAYDRYIKLWDTETGDCVSRFTSRKVPYCVKFNPDEDKQHLIVAG
TSDKKIICWDTRSGEIVQEYDRHLGAVNTITFVDDNRRFVTTSDDKSLRVWEW