| Genomic Position | scaffold403:- 28689-41163 |
|---|---|
| See gene structure | |
| CDS Length | 2073 |
| Paired RNAseq reads | 3591 |
| Single RNAseq reads | 9387 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA010496 (2e-89) |
| Best Drosophila hit | dorsal, isoform C (3e-94) |
| Best Human hit | proto-oncogene c-Rel (4e-56) |
| Best NR hit (blastp) | embryonic polarity protein dorsal [Culex quinquefasciatus] (2e-123) |
| Best NR hit (blastx) | dorsal [Manduca sexta] (7e-105) |
| GeneOntology terms | GO:0008358 maternal determination of anterior/posterior axis, embryo GO:0006955 immune response GO:0006952 defense response GO:0005737 cytoplasm GO:0005634 nucleus GO:0006355 regulation of transcription, DNA-dependent GO:0003700 sequence-specific DNA binding transcription factor activity GO:0009952 anterior/posterior pattern formation GO:0008354 germ cell migration GO:0007369 gastrulation GO:0003677 DNA binding GO:0016015 morphogen activity GO:0005515 protein binding GO:0009950 dorsal/ventral axis specification GO:0070379 high mobility group box 1 binding GO:0070491 transcription repressor binding GO:0009953 dorsal/ventral pattern formation GO:0007501 mesodermal cell fate specification GO:0001715 ectodermal cell fate specification GO:0008063 Toll signaling pathway GO:0003702 RNA polymerase II transcription factor activity GO:0000122 negative regulation of transcription from RNA polymerase II promoter GO:0016564 transcription repressor activity GO:0045893 positive regulation of transcription, DNA-dependent GO:0016563 transcription activator activity GO:0045892 negative regulation of transcription, DNA-dependent GO:0007419 ventral cord development GO:0045449 regulation of transcription GO:0007398 ectoderm development GO:0016481 negative regulation of transcription GO:0007498 mesoderm development GO:0045944 positive regulation of transcription from RNA polymerase II promoter GO:0007507 heart development GO:0031594 neuromuscular junction GO:0010004 gastrulation involving germ band extension GO:0000381 regulation of alternative nuclear mRNA splicing, via spliceosome GO:0042387 plasmatocyte differentiation GO:0035206 regulation of hemocyte proliferation GO:0043565 sequence-specific DNA binding GO:0048935 peripheral nervous system neuron development |
| InterPro families | IPR008967 p53-like transcription factor, DNA-binding IPR014756 Immunoglobulin E-set IPR000451 NF-kappa-B/Rel/dorsal IPR011539 Rel homology IPR013783 Immunoglobulin-like fold IPR002909 Cell surface receptor IPT/TIG |
| Orthology group | MCL10576 |
Nucleotide sequence:
ATGGACAACGGCGGAGTTGAGGCGATCACGAAGGCGGACCCGCTGTTCGGGCCGGGAGTA
GAGGCAATGCCGCGACCTCTGACCTCCCACCCGGGGCAGACCTACGTCCGCATAGTGGAG
CAACCCGCCGGGAAGGCGCTCAGGTTCCGGTACGAGTGTGAGGGTCGGTCGGCGGGCTCC
ATCCCCGGGGTGAACAGCACCCTCGAGAGGAAGACCTACCCCACCATAGAGATCGTGGGC
TACAAGGGAGATGCCGTCGTCGTGGTGTCCTGCGTCACCAGGGAACAGCCCTACAGACCT
CACCCCCACAACCTGGTGGGTCGCGAGAGGTCATGCGAGAACGGAGTGTGCACCGTGAAG
AGGAGCATCAGCGAGGAGTCGCCACAGGTGTCCTTCAGTAACCTGGGGATACAATGTGTC
AAGAGGAAGGACATCGCCGAGGCGCTCAAGACGAGAGAGAGGCTCCGGGTGGACCCTTTC
AAGACCGGTTTCGGTCACCGCAACAAGCCGCAGAGCATCGACCTGAACACTGTGAGGCTC
TGCTTCCAAGTGTTCCTCCCTGACGAGCGGACAGGCAAGATCAAGCACTCGCTGCCGCCC
GTCGTGTCCGACGTCATCTACGACAAGAAGGCCATGAGCGACCTGGTCATCATGAGGGTC
AGCCAGTGCTCGGACTTCGTCAAGGGAGGCGCCGAGATCATCCTGCTGTGCGAGCGAGTG
ACGCGCGAGGACATCTCCGTGGTGTTCTTCCAAAAGGAGGGCGACAACGTGGTTTGGGAG
GAAAGCGCGCACATCGTGCTCGTCCACAGGCAGTACGCCATCGCTTTCCACACGCCGCCC
TACAGAGACCAGGCGGAGACAGGACACGTGCAGGTGTATCTCCAGCTGAAGCGGATCTCG
GACAACGCCCGCAGCAACGCCGTGCCGTTCGAGTACATCCCGGAATACCAAGGTACCGTT
CGTAAGCCTGTCCCCGACCTCAGCGTCTTCTCTCTTCTCCTCTCCCCTGACGGCAACAAC
AACGACAGCAACATAACCGAGGAAGCGCTCCCTGACAAAAGTGACGGGGCGCCGGTCGCC
GCCGAGCTGGTGACCTCCACGAGCGACCTCGATACCGCCATGGACACCACCATGGACGTG
GACTCTAACGAGAAGAGTCTGGACGACCTCCTGGAGCAGGTCGCCGAGCTCGACGAGATA
TACTGCGAGAACAGGACGAGGCTAGAGGTCGGCCCGCGGGACCACGACACCGACCCCGAG
GAGTTTGACGACGCGGGCACCTACACCAGTCTGCAGCTCGCCTTCAAGAACCCCGTCACC
ATAGCGGAGCCCGAGAACTACGAGGACGTGCAGCCGCCCGCGCACACCTACCGCGGACCC
ATCATCGAGTTCACGCCGCTCAAACCCGAGGCGGAGGAGGCGCCGCCGCTACCTCCCAAG
CGAGTCCGGAAGACCAGCGAGTCCTTCAAGACCAGTCAGACCTCCGTAGACGGCATCCTC
AAGCCGGGCCGCCGTCTACCGCTCACTCGCAACCCCGAGGCGGCGAGTGTGAACGGAGCC
GAGCTGACGACGGCGCGCAGCGAACCCGCCCTGCCGCCCGCGCCCAAGAAACGTTCGTTC
TTCTCGAGACTGTTCCGGAGGAGGGACAAGTCGCCCGCGCCCAGCGTCAAGTCCGAGGGC
AAGCGCGAGCCGCGTGGCGCCAGGCCGGTGGGGCGCTCCGTGAGCAGCGTGTCGGGGCTG
CGGCCGGCCAAGTTCAAGTCGTCCGCCTCGCTGAAGGACAACGCATCCTTGGCGTGCGCG
GACAGCGTCACGCGCATCTCTCTCCACGAGGATGAGCCGTCGCGAGCGCCCAGCCTGGCG
GCCGGCCTGCCGCCCGACGGGACCATCCTGGTGGCGGAGAGCGTGCTGGCGCTGGACGCG
GACTCCTTCCGGCGCCTGCGGGACGACCTGGAGCTGACGGAGGCCGAGCACTACGCGCTG
TACATGGCCGTGGCGCCCCACGCCACCGCCTCCGAGTTCGACGACACCAGCTGCTACTAC
TCGCCCGTGGACGGAGCCAAGTTCCACAACTGA
Protein sequence:
MDNGGVEAITKADPLFGPGVEAMPRPLTSHPGQTYVRIVEQPAGKALRFRYECEGRSAGS
IPGVNSTLERKTYPTIEIVGYKGDAVVVVSCVTREQPYRPHPHNLVGRERSCENGVCTVK
RSISEESPQVSFSNLGIQCVKRKDIAEALKTRERLRVDPFKTGFGHRNKPQSIDLNTVRL
CFQVFLPDERTGKIKHSLPPVVSDVIYDKKAMSDLVIMRVSQCSDFVKGGAEIILLCERV
TREDISVVFFQKEGDNVVWEESAHIVLVHRQYAIAFHTPPYRDQAETGHVQVYLQLKRIS
DNARSNAVPFEYIPEYQGTVRKPVPDLSVFSLLLSPDGNNNDSNITEEALPDKSDGAPVA
AELVTSTSDLDTAMDTTMDVDSNEKSLDDLLEQVAELDEIYCENRTRLEVGPRDHDTDPE
EFDDAGTYTSLQLAFKNPVTIAEPENYEDVQPPAHTYRGPIIEFTPLKPEAEEAPPLPPK
RVRKTSESFKTSQTSVDGILKPGRRLPLTRNPEAASVNGAELTTARSEPALPPAPKKRSF
FSRLFRRRDKSPAPSVKSEGKREPRGARPVGRSVSSVSGLRPAKFKSSASLKDNASLACA
DSVTRISLHEDEPSRAPSLAAGLPPDGTILVAESVLALDADSFRRLRDDLELTEAEHYAL
YMAVAPHATASEFDDTSCYYSPVDGAKFHN