| New model in OGS2.0 | DPOGS205262 |
|---|---|
| Genomic Position | scaffold606:- 57580-58377 |
| See gene structure | |
| CDS Length | 417 |
| Paired RNAseq reads | 80 |
| Single RNAseq reads | 352 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA011062 (1e-54) |
| Best Drosophila hit | LSm1 (1e-45) |
| Best Human hit | U6 snRNA-associated Sm-like protein LSm1 (6e-41) |
| Best NR hit (blastp) | LSM1-like protein [Bombyx mori] (3e-68) |
| Best NR hit (blastx) | LSM1-like protein [Bombyx mori] (1e-67) |
| GeneOntology terms | GO:0030532 small nuclear ribonucleoprotein complex GO:0005681 spliceosomal complex GO:0006396 RNA processing GO:0000398 nuclear mRNA splicing, via spliceosome GO:0033962 cytoplasmic mRNA processing body assembly |
| InterPro families | IPR010920 Like-Sm ribonucleoprotein (LSM)-related domain IPR001163 Like-Sm ribonucleoprotein (LSM) domain IPR006649 Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type |
| Orthology group | MCL14320 |
Nucleotide sequence:
ATGTCTAATAATATTAATCCTTTAGCTGGAACTGCTCATTTGCTGGACGAACTGGATAAG
AAATTAATGGTGTTACTGCGTGATGGAAGGACCTTGATCGGATACTTACGCTGCGTGGAC
CAGTTCGCAAACTTAGTTTTACATAAAACCATCGAGAGGATTCATGTGGGTCGTGAATAC
GGGGATATACCGCGGGGAATATTCATTGTTAGGGGGGAGAATGTTGTACTTTTAGGGGAA
ATTGATAAAGAGAAAGAAGAAAATCTTCCGTTAACAGAAGTCTCTGTAGATGACATTCTA
GATGCTCAACGGCGAGAACAAGATACAAAGACGGAACAACAAAAATTATTGTCAAAAGCT
CTTAAAGACCGGGGCCTTAATTTGATAGCTGACTTAGGCCATGATGATATGTTCTAA
Protein sequence:
MSNNINPLAGTAHLLDELDKKLMVLLRDGRTLIGYLRCVDQFANLVLHKTIERIHVGREY
GDIPRGIFIVRGENVVLLGEIDKEKEENLPLTEVSVDDILDAQRREQDTKTEQQKLLSKA
LKDRGLNLIADLGHDDMF