| New model in OGS2.0 | DPOGS200311 |
|---|---|
| Genomic Position | scaffold304:+ 31493-38535 |
| See gene structure | |
| CDS Length | 3267 |
| Paired RNAseq reads | 3126 |
| Single RNAseq reads | 9159 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA005589 (7e-13) |
| Best Drosophila hit | gawky, isoform F (4e-76) |
| Best Human hit | trinucleotide repeat-containing gene 6C protein isoform 2 (4e-32) |
| Best NR hit (blastp) | PREDICTED: similar to CG31992-PA, isoform A, partial [Apis mellifera] (0.0) |
| Best NR hit (blastx) | PREDICTED: similar to CG31992-PA, isoform A, partial [Apis mellifera] (0.0) |
| GeneOntology terms | GO:0003676 nucleic acid binding GO:0000166 nucleotide binding GO:0035195 gene silencing by miRNA GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay GO:0000932 cytoplasmic mRNA processing body GO:0001700 embryonic development via the syncytial blastoderm GO:0006402 mRNA catabolic process |
| InterPro families | IPR009060 UBA-like IPR015940 Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote IPR012677 Nucleotide-binding, alpha-beta plait IPR000449 Ubiquitin-associated/translation elongation factor EF1B, N-terminal |
| Orthology group | MCL12080 |
Nucleotide sequence:
ATGGATGCTATGCTGGAGTTATTACAAAATGAAGGAAAAAAGATCAAGCAAATGTATAAG
AGTGACATGGATTCATGGGGAGTCCCACATCAATTAAGGCTTCGAGGAGGAGGGGAAACC
TCACTTAACGCTGCAAGTGGCTGGGGTAGCCCACCTGCTTCCAATACTGCTGGAAACTGG
AGTGGTAATTCCAGTGGCCAATCCAATAATGGAACAAACAATACTCAACAGTGGAACAAT
ACCAACAGGCCACCCACCTCTCAAGCTGACATGAACAGCAACAAGGGTAATGGTAGTCAA
ATTCCACCAACCAGTGCAGCATCTCAAAGTTGGCAGAGCTCACCACCTAATATGCCAAAT
GCACAAACCAATAATAATGGTGCACCTACAAATAATGGTACAAATAATGCTGTCAATGGG
AACAATGGAAGCAACCCATCAAATAATGTTACAAGTTCCAATGGCCCCAGTGGTGGAAAT
GGAAATGGTAATAGTACCAACAATACATCTTCAGCAAAAATTGAGCAATTGAACTCGATG
AGGGAAGCTTTATTTAGCCAGGATGGTTGGGGAGGTCAACATGTCAACCAAGATACAAAT
TGGGATGTACCTGGATCACCAGAACCAGGTTCGAAAGTGGAACCAGCAGCTTCCGGGCAA
CCTGCTTGGAAACCAAATGTCAATAATGGTGCTTTCCTCGGAACTGATTTATGGGAAGCC
AACTTAAGAAATGGAGGTCAGCCTCCACCACCTCCGGCGACGAAGACCCCATGGGGTCAC
ACTCCGACAACGAATATCGGAGGTACATGGGGAGAAGACGACGATGCATCAGATTCTGCT
AATGTATGGAACGGTCCACCGCCCGCCCAGCAATGGCCGGCTGGTCCTCCACAACACACC
CAGCAGTGGGGGGTTCCCAAGAAGGATGATTGGAACGCCTGGGGTGAGCCTCATAGGCCG
GCAGATCCACGTCTGGATCCGCACCGCACACCAGACCCACGTCAACAGCCGTCGGACCCC
CGACATGACATTCGTGGAGGCATATCCGGTCGTCTGAACGGCGACATGTGGAGCCAACAC
CATCAACACCCTGCTGGACCCAATAAAATGATGCCCAGCGGAGGCGTTAGTCAGTGGGGC
GGACAGGGTCCTAAGGAAGCGATTAAATCTGCCGGCTGGGAGGAGCCGTCTCCACCAGCG
GCTCGTCGTGGAGGCACCGGGTTTGACGACGGCACGTCTCTCTGGGCCCAGCGTGGAATG
GGTGGTATGTCTCGCGGAGCGCCTCAGGGCCCGCCGCCTTCTCAGCGCATGGCTCCAGCT
CCTTCTAAGCCTGACGGTGTGTGGGCCGCCCACGCCCAACGCAACGGTCCGTGGGAAGAA
TCACACGGCTGGGGCGAACGCGACGTTCACTGCTCCTGGCAAGACCCCAGCGGGCCGACA
CTTTGGCCCGTACCAAAACCGAAGCCCAGCGGCCCGGCGGCAGCCTGGCCTGACGACATC
GGCGAGTGGGGAGGCCCAAAGCCACCACCGAGCGGAGCTCTGGGTAAACAACTGCCGAAG
GAAGTGGTGTGGAATAGTAAGCAGTTCAGATATTTAGTCGAGATGGGCTACAAGAAAGAG
GAGGCCGAAGCTGCACTCCGCAGTCGCGACATGAACGCGGAAGAGGCACTGGACATGTTG
GCGGCGGCGCGAGGCGACTGCTGGAGGCGAGATGACAATTTCCACTCGGGTGGTTTCCCG
CCGCAGCCCTCCGTGCCGGCCGTCTCACCAGCTGTGGTACAGAAGCTGCTCAACCAGCAG
CCGCCGCCAGCAGTTCAGCATCACCCTTCGTACAACCCCAATAGTGGAACGGGCAGCAGC
GGCCAACCGAGCACTGCTCAACTGCGCATGCTGGTTCAGCAGATCCAAATGGCAGTGTCT
GCGGGTTACTTAAACCATCAGATATTGAACCAGCCGTTGGCACCACAGACACTGGTGCTG
CTCAACCAGCTATTGCAGCAAATAAAAGTCCTGCAGCAACTTGTCAACCAGCACCAGCTG
GCCATACCGAAAGCGAACTCCACTTTGACGTTACAATATTCCATGCAAATAACTAAAGCT
AAACAACAGATTCAAGCCTTACAGAACCAAATCACAACTCAACAAGCGCTGTACATGAAG
CAGCAAGCTGCAGCATCAGATCTGTTCAAGCAGCCCCATGACCATTTGTCAAACATGCAG
CAGAACTTTAGCGAGATGGCTATCTCTAAGGATTCTCAGTCTGGTTTTGGTAGTAGCGGT
AACCAGCAGTCCCGCTTGAACCAGTGGAAGCTTCCATCGTTGGATAAAGACGGTGAGGGT
ACCGACTTCAGCCGCGCCCCCGGCACCGCCAAGTCTACCACGAGCCCGCAACTCAATCAG
ATTAGTTTGCAGCCTGATACTACCTGGGGTATGGGTCGCTCGGAAGGTTGGGGCGATGGT
TCAGATGTGGCAGACGGAAAAGACGCCTGGCCCTCACACCCCTCGCATCCGCCCGCATAC
GACCTGGTCCCCGAGTTCGAACCTGGGAAGCCTTGGAAGGGCAATCAAATGAAGAATGTA
GAAGACGACCCAGCCATGACACCTGGATCAGTCGTACGTTCACCGATATCTTTGACCAAT
ATCAAGGACAGCGACATGCTCGGAGGAAAGACTTCGCCGCCCGGCGGCGAGAGGACGCTA
TCCTCCGCCACGTGGAGCTACGCCCCGCCAGCCACCAGCGCCGGCGGACTCAAGCCGCTA
GACGTTTGGGGGGCTAAGCCCCGTCCCGCCCCGCCTGGACTCAATAAGTGGCCACAGCAC
CACGTCAACTCCCGTGCTGCCCCCTCGTGGCAGACATCTACCTGGCTGCTTCTGAGAAAT
CTCACTGCTCAGATCGACGGATCAACTTTGAAGACTTTATGTGTGCAACACGGCCCGTTG
CAAAACTTCCACCTCTACCTCAACCAGGGACTCGCTCTCGCTCGCTACTCGACTCGCGAA
GAGGCGGCTAAGGCCCAGATGGCATTAAACAACTGCGTTCTAAGCAACACGACTATCTTC
GCGGAGTCGCCGGCCGAGTCTGACGTGCAGCTGATACTGCAACACCTGGGCTCTGGCGGT
GGCGGCGCCTGGCGCGGAGGAGCCTCTAAGGACGGCTGGAACGGCGCCTTCCCCGGCCTG
TGGCAGGAGCAGCACGAGCAGCGCGCGACTCCGTCGTCGCTGAATTCGTTCCTGCCGCCG
GACCTGCTCGGCGGCGAGTCCATCTAA
Protein sequence:
MDAMLELLQNEGKKIKQMYKSDMDSWGVPHQLRLRGGGETSLNAASGWGSPPASNTAGNW
SGNSSGQSNNGTNNTQQWNNTNRPPTSQADMNSNKGNGSQIPPTSAASQSWQSSPPNMPN
AQTNNNGAPTNNGTNNAVNGNNGSNPSNNVTSSNGPSGGNGNGNSTNNTSSAKIEQLNSM
REALFSQDGWGGQHVNQDTNWDVPGSPEPGSKVEPAASGQPAWKPNVNNGAFLGTDLWEA
NLRNGGQPPPPPATKTPWGHTPTTNIGGTWGEDDDASDSANVWNGPPPAQQWPAGPPQHT
QQWGVPKKDDWNAWGEPHRPADPRLDPHRTPDPRQQPSDPRHDIRGGISGRLNGDMWSQH
HQHPAGPNKMMPSGGVSQWGGQGPKEAIKSAGWEEPSPPAARRGGTGFDDGTSLWAQRGM
GGMSRGAPQGPPPSQRMAPAPSKPDGVWAAHAQRNGPWEESHGWGERDVHCSWQDPSGPT
LWPVPKPKPSGPAAAWPDDIGEWGGPKPPPSGALGKQLPKEVVWNSKQFRYLVEMGYKKE
EAEAALRSRDMNAEEALDMLAAARGDCWRRDDNFHSGGFPPQPSVPAVSPAVVQKLLNQQ
PPPAVQHHPSYNPNSGTGSSGQPSTAQLRMLVQQIQMAVSAGYLNHQILNQPLAPQTLVL
LNQLLQQIKVLQQLVNQHQLAIPKANSTLTLQYSMQITKAKQQIQALQNQITTQQALYMK
QQAAASDLFKQPHDHLSNMQQNFSEMAISKDSQSGFGSSGNQQSRLNQWKLPSLDKDGEG
TDFSRAPGTAKSTTSPQLNQISLQPDTTWGMGRSEGWGDGSDVADGKDAWPSHPSHPPAY
DLVPEFEPGKPWKGNQMKNVEDDPAMTPGSVVRSPISLTNIKDSDMLGGKTSPPGGERTL
SSATWSYAPPATSAGGLKPLDVWGAKPRPAPPGLNKWPQHHVNSRAAPSWQTSTWLLLRN
LTAQIDGSTLKTLCVQHGPLQNFHLYLNQGLALARYSTREEAAKAQMALNNCVLSNTTIF
AESPAESDVQLILQHLGSGGGGAWRGGASKDGWNGAFPGLWQEQHEQRATPSSLNSFLPP
DLLGGESI