| New model in OGS2.0 | DPOGS204681 |
|---|---|
| Genomic Position | scaffold2020:- 62764-64492 |
| See gene structure | |
| CDS Length | 639 |
| Paired RNAseq reads | 320 |
| Single RNAseq reads | 1058 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA010251 (4e-98) |
| Best Drosophila hit | Autophagy-specific gene 8a (1e-17) |
| Best Human hit | microtubule-associated proteins 1A/1B light chain 3C (3e-31) |
| Best NR hit (blastp) | microtubule-associated protein 1 light chain 3 [Bombyx mori] (2e-106) |
| Best NR hit (blastx) | microtubule-associated protein 1 light chain 3 [Bombyx mori] (1e-100) |
| GeneOntology terms | GO:0012505 endomembrane system GO:0005776 autophagic vacuole GO:0005515 protein binding GO:0031090 organelle membrane GO:0031410 cytoplasmic vesicle GO:0005874 microtubule GO:0000421 autophagic vacuole membrane GO:0006914 autophagy GO:0005737 cytoplasm |
| InterPro families | IPR004241 Light chain 3 (LC3) |
| Orthology group | MCL13155 |
Nucleotide sequence:
ATGGCGATTAAAAGCAAATTCCCAAATAAAATACCGCTCATAGTAGAGAGATACCATAAA
GAGAGAGGTCTACCGACTTTGGATAAAACAAAGTTCCTTGTACCAGAAGACATAACAATG
TCTCAATTCTTAGTTATAATACGCAACAGAATAAGGATTAAACCAAACCAAGCGCTGTAT
TTAATAATAAACAACAGGTCTATGCTGAGCATGAGTTTGACTATGTCTCAGGCGTACGAA
CTCTACGGTGACGAGGATGGATTTTTATACATAACGTATGCATCTCAAGAAGTTTTCGGT
TATCAAGATGATATGACAGGGTCTAATAAAGAGGTACAAGTCATTAGAGACCGATTTCCG
AATAAAATACCGTTGTACGTGGAAAGATATTCAAGAGAGAAAGAGGTACCGGTCTTAGGT
AGGAACAAATTCCTAGTGCCTCAAGAACTCACTATGTCACAGTTCCTCTACATCATTCGG
ACAAAGATGAAATTGAGAGATTCACAAGCGTTGTATCTGTTGGTGAATGATAAAGTCCTA
GTGAGCCACAGTATGACGATGTCGCAGGCATACGAACAGTTCCGTTCCACCGATGGATTC
CTTCACATCACCTACGCTGCACAACAGGTATTTGGATGA
Protein sequence:
MAIKSKFPNKIPLIVERYHKERGLPTLDKTKFLVPEDITMSQFLVIIRNRIRIKPNQALY
LIINNRSMLSMSLTMSQAYELYGDEDGFLYITYASQEVFGYQDDMTGSNKEVQVIRDRFP
NKIPLYVERYSREKEVPVLGRNKFLVPQELTMSQFLYIIRTKMKLRDSQALYLLVNDKVL
VSHSMTMSQAYEQFRSTDGFLHITYAAQQVFG