New model in OGS2.0 | DPOGS212958  |
---|---|
Genomic Position | scaffold4074:- 8704-15967 |
See gene structure | |
CDS Length | 1506 |
Paired RNAseq reads   | 699 |
Single RNAseq reads   | 1564 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA001693 (6e-84) |
Best Drosophila hit   | CG9772, isoform D (3e-51) |
Best Human hit | S-phase kinase-associated protein 2 isoform 1 (3e-30) |
Best NR hit (blastp)   | GA22024 [Drosophila pseudoobscura pseudoobscura] (2e-68) |
Best NR hit (blastx)   | GA22024 [Drosophila pseudoobscura pseudoobscura] (4e-64) |
GeneOntology terms    | GO:0019005 SCF ubiquitin ligase complex GO:0006511 ubiquitin-dependent protein catabolic process |
InterPro families    | IPR022364 F-box domain, Skp2-like IPR001810 F-box domain, cyclin-like IPR006553 Leucine-rich repeat, cysteine-containing subtype |
Orthology group | MCL13833 |
Nucleotide sequence:
ATGAATGTAAATAATATCGCAGAAGATCGTTTAGCTCCTGCTTTAGATGTTATTGAAAGT
CCACGGAAAAGAATGCGCGTCGATAATTCCTCTCGCAAAAGCTGGAGTTTGATGGACAGA
AGAACTGATTCTGATGTTCTCAATGAGATGGGTGTCAGTTTATTGGACCCGGAGGAGGAG
CAATCAGAGCATAATGTGCAGAAATCATTAAAAAGAAAACACGACATAGAGAATGTTAAT
CCTAATGTGAACAGCGTGTCCCGGGGACGGTTCAGCCCCAGGTCCCCACTGAAGATGAGC
CCCGGACCCTCTAAGGTACTGGCCAGGAGTCCACGCAGCTGTGATAAGGCCAAGCCGGAT
CTGGACTCGTCGCTGCCCCTGACATATGTCAATGATGAGGAGACGCCGCTCGGCCAATCG
GTGGCCGTTTCGTGTAAACACGCGGCAAAACCTCACAACACCAGCAAGAAGGAAAACTAT
TTCGATTTGGCCCCCCCCGTGCCCAGCCCCCCCGCGGACGGAGGGGACTCCTTCCTGTCT
CTATCAGACGAGGTGGTGCTGTCAGTGATGCGCTGGCTGCCGAAGAGGACGCTAGCTCAC
TGTATGCTGGTCTGCAAACGATGGCGTCGAATAGCCTCCGATGAGACCCTCTGGACCCGT
CTGGACCTGGGGAACAAGACGCTCGCGGCGGGGGCCTTAGGAAAGGTCGTCAATAGGACT
CCCATAGTACTGCGGCTGGCGGGGAGCGAGATAGGCGAATGGCATCCCGAGTCAGCTCCA
GTACAAACAAGAATCCAGTATCTAGACCTGAGCATGTGCACCATAGACTATAGAACTCTT
GAGAGTTTGCTCAGTCGGTGCTCAGGGCTCAAGAAACTCAGTCTGGAGAATGTTAAACTG
AGCGAATACAGCCAGGAGTTGATTGGGAAATGCAGCGGCCTTGAAACCCTAAACCTGGCT
ATGGCTCAAGGCATCACAGCAACCGGACTGACTAACATACTAGAGGGCTGCCCCGGCTTG
TCCTCGCTGAACATCTCCTGGTGTAACTTGAGCGAGGCGGCGCTGGAGGTGCTGGTGACG
AGGCTGCCACAGAAGTTGAGTCGGCTCAACATAAGCGGCGCTCGCAGTATGACTGACGAA
AATGTCCAGGCATTGTCGTGTCGCTGCCCGCGCCTGCTGGAGCTGGACGTGTCGGACTGC
TCTCGTCTCAGCGCCTGTTCGCTGAGCGCCCTGCTGCCTCTCACCCGCCTGGAACACCTG
GCGCTCAGCCGCTGCTACCTGCTGCCGCCGCACGCGCTCACTAAGCTGTCTCGCATGTCC
TCCCTTCAATTCGTGGAGGTGTGGGGGACTCTGCAGCACGCGTCCCTGGCGGCGCTGCGG
GCAGCCCTGCCGGCGGTCACCATCAACCAGTTCATGTTTAGTATTAACGTGTGTCTGTCT
GTGCAGCGCCATCGCCCGCCCAACGGTCGGCACGCGGCGGACATCGGTATGGGGTCTAAG
GACTAG
Protein sequence:
MNVNNIAEDRLAPALDVIESPRKRMRVDNSSRKSWSLMDRRTDSDVLNEMGVSLLDPEEE
QSEHNVQKSLKRKHDIENVNPNVNSVSRGRFSPRSPLKMSPGPSKVLARSPRSCDKAKPD
LDSSLPLTYVNDEETPLGQSVAVSCKHAAKPHNTSKKENYFDLAPPVPSPPADGGDSFLS
LSDEVVLSVMRWLPKRTLAHCMLVCKRWRRIASDETLWTRLDLGNKTLAAGALGKVVNRT
PIVLRLAGSEIGEWHPESAPVQTRIQYLDLSMCTIDYRTLESLLSRCSGLKKLSLENVKL
SEYSQELIGKCSGLETLNLAMAQGITATGLTNILEGCPGLSSLNISWCNLSEAALEVLVT
RLPQKLSRLNISGARSMTDENVQALSCRCPRLLELDVSDCSRLSACSLSALLPLTRLEHL
ALSRCYLLPPHALTKLSRMSSLQFVEVWGTLQHASLAALRAALPAVTINQFMFSINVCLS
VQRHRPPNGRHAADIGMGSKD