| New model in OGS2.0 | DPOGS210520 |
|---|---|
| Genomic Position | scaffold296:+ 47589-52955 |
| See gene structure | |
| CDS Length | 1812 |
| Paired RNAseq reads | 353 |
| Single RNAseq reads | 1890 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA012623 (0.0) |
| Best Drosophila hit | marionette (1e-167) |
| Best Human hit | general transcription factor IIH subunit 4 (4e-132) |
| Best NR hit (blastp) | PREDICTED: similar to TFIIH basal transcription factor complex p52 subunit [Tribolium castaneum] (0.0) |
| Best NR hit (blastx) | PREDICTED: similar to TFIIH basal transcription factor complex p52 subunit [Tribolium castaneum] (0.0) |
| GeneOntology terms | GO:0016251 general RNA polymerase II transcription factor activity GO:0005675 holo TFIIH complex GO:0006367 transcription initiation from RNA polymerase II promoter GO:0006355 regulation of transcription, DNA-dependent GO:0006281 DNA repair |
| InterPro families | IPR004598 Transcription factor Tfb2 |
| Orthology group | MCL10752 |
Nucleotide sequence:
ATGACGGAGGCGCGGTTTCTACGAGCGCCCGAGATCTCACATCGATCCCTCCGCGGGCAT
ATCGAAAGCGAAACACTAGATCGAACCGAGTCGTACACTGTTTTCGTGTTTCTAAGACGA
TTATTCACGGAGCACATATACACAATGTCCCGTTCCGAAGGATATACACAAAATGGTGCT
GAGCGAAACGGAATAGCACTGTACTCGACGAGTTGTCTATGCGCGACTGACGGAAGGCGT
CTACTGTATCCGCCATCTGCCGACGAGAATGAATGCGGTGAACTCGTCGCCTGGAGGTAC
TGTGTGCGTGTGTTTGTACACGGCCGTGACGTGAAAAGTAATTTGACTATTGCATTGAAT
ATAAGTAAAGTGTTCCAAACAATGTCAGAGTCATCTAAGTCAAAGTCTTCTTCAAGTACA
AATCCTTCCCCGACACTACAATGCAAGGATCTTCACGAATATTTGAAAAGTCGCTCGCCT
CAGTTCCTCGAAACCTTATACAATTATCCCACAATATGCTTAGCGGTATATCGAGAACTG
CCTGAGTTAGCCCGACATTTTGTGATCCGATTGCTGTTTGTAGAACAACCTGTCCCTCAA
GCAGTGGTTGCTTCTTGGGTCACACAGACTCATGCCAAAGAGCAACACAAAGCTTGCGAG
GCTCTGTCGGAGCTGTCTGTGTGGCAGGAGGCTCCTATCCCTGGAGGTCTGCCGGGATGG
ATGCTTTCACAGTCTTTTAAGAAGAATCTGAAAGTTGCTCTTCTTGGAGGCGGTCGTCCA
TGGAGCATGTCATCCTCTCTGGAACCGGATGGCAAGGCTCGTGATGTGTCATTCCTGGAC
GCGTACGCTCTTGAACGCTGGGAATGTGTTCTGCATTACATGGTGGGATCAACACAGACC
GAGGGGATCAGTGCTGATGCTGTCAGGATACTGCTACAGGCCGGACTCATGAACAGAGAT
GCAGAAGATGGCACAGCTGTTATAACCAGAGCTGGATTCCAGTTTCTGCTCCTCAGCACA
GCTAAACAGGTATGGCTGTTTCTCCAACACTACCTGCACACGGCGGAAAAACGCAGTCTC
AGCGCCGCGGAGTGCCTCGCCTTCCTGTACCAGCTCAGCTTCAGCACACTCGGCAAGGAT
TACAGCACGGAGGGTATGAGTAACAACATGCTGGTGTTCCTCCAGCACCTGAGGGAGTTT
GGGCTCGTCTACCAGAGGAAGCGTAAAGCGGGTCGATTCTACCCGACCCGTCTGGCGCTG
AACATCACGTGTGTGAAGGACGGCGTGGCTCCCCTGCAGACGGCCGCCAGCTCGGGCTAC
ATCATCGCGGAGACCAACTACCGGGTGTACGCCTACACCACCAGCGCCCTGCAGGTGGCG
CTGCTGGGACTCTTCACTGAACTAGTCTACAGGTTCCCTAACGTGGTGGTAGGCGTCCTG
ACCCGCGAGTCCGTGCGCGCTGCCCTCCGCGGCGGTATCTCCGCCCAGCAGATCATCACC
TACCTGGAGCAGCACTCTCACCCCCAGATGCTGAAATCCGACCAGGGCGGCATCAGGTCG
TCGTCGTCGCTGCCGCCGACCGTCCTCGACCAGATCCGTCTGTGGGAGTCGGAGAGGAAC
CGCTTCACGTACACGGAGGGCGTCGTCTACAACCAGTTCCTGTCCCAGGCCGAGTTCAAC
GTGCTGAGGGACTACGGCCGCTCGTCCGGCGCGCTAGTGTGGGCGGCGGACAGGACGCGC
ACCATGGTGGTGGCCAGGGCGGCGCACGACGACGTCAAGAGATACTGGAAGAGATACTCC
AAGGCCACTTAG
Protein sequence:
MTEARFLRAPEISHRSLRGHIESETLDRTESYTVFVFLRRLFTEHIYTMSRSEGYTQNGA
ERNGIALYSTSCLCATDGRRLLYPPSADENECGELVAWRYCVRVFVHGRDVKSNLTIALN
ISKVFQTMSESSKSKSSSSTNPSPTLQCKDLHEYLKSRSPQFLETLYNYPTICLAVYREL
PELARHFVIRLLFVEQPVPQAVVASWVTQTHAKEQHKACEALSELSVWQEAPIPGGLPGW
MLSQSFKKNLKVALLGGGRPWSMSSSLEPDGKARDVSFLDAYALERWECVLHYMVGSTQT
EGISADAVRILLQAGLMNRDAEDGTAVITRAGFQFLLLSTAKQVWLFLQHYLHTAEKRSL
SAAECLAFLYQLSFSTLGKDYSTEGMSNNMLVFLQHLREFGLVYQRKRKAGRFYPTRLAL
NITCVKDGVAPLQTAASSGYIIAETNYRVYAYTTSALQVALLGLFTELVYRFPNVVVGVL
TRESVRAALRGGISAQQIITYLEQHSHPQMLKSDQGGIRSSSSLPPTVLDQIRLWESERN
RFTYTEGVVYNQFLSQAEFNVLRDYGRSSGALVWAADRTRTMVVARAAHDDVKRYWKRYS
KAT