| New model in OGS2.0 | DPOGS207282 |
|---|---|
| Genomic Position | scaffold245:+ 48277-51993 |
| See gene structure | |
| CDS Length | 1779 |
| Paired RNAseq reads | 31330 |
| Single RNAseq reads | 79043 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA011746 (0.0) |
| Best Drosophila hit | Rm62, isoform H (2e-175) |
| Best Human hit | probable ATP-dependent RNA helicase DDX17 isoform 3 (1e-166) |
| Best NR hit (blastp) | DEAD box polypeptide 5 [Papilio xuthus] (0.0) |
| Best NR hit (blastx) | DEAD box polypeptide 5 [Papilio xuthus] (0.0) |
| GeneOntology terms | GO:0004004 ATP-dependent RNA helicase activity GO:0003729 mRNA binding GO:0005515 protein binding GO:0016246 RNA interference GO:0005524 ATP binding GO:0003676 nucleic acid binding GO:0000381 regulation of alternative nuclear mRNA splicing, via spliceosome GO:0005634 nucleus GO:0019730 antimicrobial humoral response GO:0005703 polytene chromosome puff GO:0005875 microtubule associated complex GO:0071011 precatalytic spliceosome GO:0071013 catalytic step 2 spliceosome GO:0000398 nuclear mRNA splicing, via spliceosome |
| InterPro families | IPR014001 DEAD-like helicase IPR001650 Helicase, C-terminal IPR014014 RNA helicase, DEAD-box type, Q motif IPR000629 RNA helicase, ATP-dependent, DEAD-box, conserved site IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal |
| Orthology group | MCL10086 |
Nucleotide sequence:
ATGGCAATATACATTATACATTCATTCAATAAAAGGCTCATTAATTCTGTAGCCGCCATT
TTAATCTCTCTTGCAAAGGCAGTGGTCAAGGTGAGACGTGTGTTGAATTTAGCTTATGGT
GATAAGTCAAACAACCATTGGAACAATAGCCGTGGTGAAAACGGTGGTTCCAAATTCGGA
GGAGGGGGCAAGTTCGGAGGTAATGGAACATCACGATTTAATCATGGAGGCTCTAAATTT
GGTGGTGGTGGTGGGGGCAAGTTTGGCGGCGGAGGAAAGAAAGAGTTTTCCGGAGGCCAA
AGTATGAGACGACCAAACTGGGACACAATGTCCTTACAACCGTTTAACAAAGATTTCTAC
AACCCGCCACCATCAGTCCTAAACAGATCACCATATGAGGTTGAGGAGTACAGAAACAAG
CATGAGGTTTCCGTCAGCGGAGCCGATGTTCCTAACCCGATACAGCATTTTGAAGAAGGA
AACTTCCCAGACTATGTTATGAAAAGCATTTCAAGCATGGGTTACAATGAGCCCACGCCT
ATCCAGGCTCAAGGGTGGCCGATTGCCATGTCTGGAAAGAATTTAGTTGGTATTGCACAG
ACTGGATCTGGAAAAACACTGGCGTACATTCTGCCTGCCATTGTTCATATCAATAACCAA
CAGCCCGTAAGAAGGGGTGACGGTCCAGTTGCACTTGTTTTGGCGCCAACTAGGGAATTA
GCACAGCAGATACAACAGGTTGCCACAGATTTTGGTAATGCCGCATATGTGCGTAACACG
TGCGTCTTTGGTGGTGCACCTAAGAGGGAACAAGCCCGTGATTTGGAGAGAGGGGTTGAA
ATTGTGATTGCTACCCCTGGAAGGTTAATTGATTTCTTAGAAAAGGGTACAACAAATCTT
CAAAGATGTACTTATCTAGTGCTTGATGAAGCTGATCGCATGTTGGACATGGGTTTTGAG
CCTCAAATACGAAAGATCATAGAGCAGATTCGCCCTGATAGACAAACTCTCATGTGGTCG
GCCACATGGCCTAAAGAGGTTAGAAAATTAGCTGAAGACTATCTTGGTGACTATGTCCAG
ATTAACATTGGATCAATGCAGTTATCTGCAAATCACAACATTCTTCAAATTGTTGATGTG
TGTCAAGAACATGAGAAAGAAAATAAGTTAAACACTTTACTACAAGAAATAGGTCAAAGT
CAAGATCCAGGTTCAAAGACGATCATATTTGTGGAGACAAAGAGAAAAGTTGAAAATATC
ACTAGAAATATTAGACGTTATGGCTGGCCAGCGGTTTGCATGCACGGTGACAAGACACAG
CAGGAAAGAGATGATGTCTTATATCAATTTAAACAAGGAAGAGCCAACATACTTGTTGCA
ACAGATGTAGCTGCCCGAGGACTTGATGTTGATGGTATCAAATATGTAATTAACTTTGAT
TACCCAAATTCATCTGAGGACTACATTCACCGGATTGGAAGAACGGGGAGATCCAAATCA
AAAGGCACGTCATACGCCTTCTTCACACCTTCAAATTCCCGTCAAGCTAAAGACCTTGTA
TCAGTGCTTCAGGAAGCCAACCAGGTTGTTAGTCCTCAATTGCAAACCATGGCTGACCGT
TGTGGAGGTGGTGGTGGAGGAGGATGGAACAGGAATAGGTTTGGAGGTGGACGAGGAGGA
GGTGGATCATTCAAGAGAGGATCAAACTTCGGCAGGGGCAGTGGAGGCCAGGGGGGTGGC
GGCGGACACAAGAGATTTAATAATGAATATGATTATTAA
Protein sequence:
MAIYIIHSFNKRLINSVAAILISLAKAVVKVRRVLNLAYGDKSNNHWNNSRGENGGSKFG
GGGKFGGNGTSRFNHGGSKFGGGGGGKFGGGGKKEFSGGQSMRRPNWDTMSLQPFNKDFY
NPPPSVLNRSPYEVEEYRNKHEVSVSGADVPNPIQHFEEGNFPDYVMKSISSMGYNEPTP
IQAQGWPIAMSGKNLVGIAQTGSGKTLAYILPAIVHINNQQPVRRGDGPVALVLAPTREL
AQQIQQVATDFGNAAYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNL
QRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVRKLAEDYLGDYVQ
INIGSMQLSANHNILQIVDVCQEHEKENKLNTLLQEIGQSQDPGSKTIIFVETKRKVENI
TRNIRRYGWPAVCMHGDKTQQERDDVLYQFKQGRANILVATDVAARGLDVDGIKYVINFD
YPNSSEDYIHRIGRTGRSKSKGTSYAFFTPSNSRQAKDLVSVLQEANQVVSPQLQTMADR
CGGGGGGGWNRNRFGGGRGGGGSFKRGSNFGRGSGGQGGGGGHKRFNNEYDY