| New model in OGS2.0 | DPOGS208467 |
|---|---|
| Genomic Position | scaffold1274:+ 20089-21593 |
| See gene structure | |
| CDS Length | 996 |
| Paired RNAseq reads | 35 |
| Single RNAseq reads | 132 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | ND |
| Best Drosophila hit | ND |
| Best Human hit | DNA polymerase beta (7e-98) |
| Best NR hit (blastp) | PREDICTED: similar to predicted protein [Acyrthosiphon pisum] (4e-117) |
| Best NR hit (blastx) | PREDICTED: similar to predicted protein [Acyrthosiphon pisum] (8e-107) |
| GeneOntology terms | GO:0003677 DNA binding GO:0003684 damaged DNA binding GO:0003887 DNA-directed DNA polymerase activity GO:0005515 protein binding GO:0005634 nucleus GO:0005654 nucleoplasm GO:0005737 cytoplasm GO:0005874 microtubule GO:0005876 spindle microtubule GO:0006260 DNA replication GO:0006284 base-excision repair GO:0006287 base-excision repair, gap-filling GO:0006290 pyrimidine dimer repair GO:0006916 anti-apoptosis GO:0008017 microtubule binding GO:0008219 cell death GO:0016740 transferase activity GO:0016779 nucleotidyltransferase activity GO:0016829 lyase activity GO:0019899 enzyme binding GO:0045471 response to ethanol GO:0046872 metal ion binding |
| InterPro families | IPR019843 DNA polymerase family X, binding site IPR002054 DNA-directed DNA polymerase X IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 IPR018944 DNA polymerase lambda, fingers domain IPR002934 Nucleotidyl transferase domain IPR010996 DNA-directed DNA polymerase, family X, beta-like, N-terminal IPR002008 DNA polymerase, family X, beta-like IPR022312 DNA polymerase family X |
| Orthology group | MCL18018 |
Nucleotide sequence:
ATGAGCAAGCGAAAGAATCCATCTACCAATAATAATGTGAATGCAGATTTTTGCGACTTT
TTAATGGAATTAGCTGATTATGAAAAAAATGTCAGTCGTAATATTCATAAATACAATGCC
TATCGTAAAGCTGCTAGCGTTTTAGCTGCCCATCATAAACGTATTGAATCTGGGCAGCAA
GCAAAGAAGTTAAATGGTGTAGGAGAAAAAATATCAAAAAAAATTGACGAGTTCTTACAA
ACGGGAAAATTGAGAAAATTAGAAAATATACATAATGACGAAAAGGCGCAAGCTATCAGT
TTACTAACACGGGTTTCGGGTATCGGTCCTGTGAAAGCTGCTGATTTAATTGATAAGGGT
ATAAAAACTTTAGAAGATTTGAACAAAAACCAAGATTTGTTAAACCACCATCAACTGATT
GGTCTGAAGTATTTCGAAAATTTCGAGGAGAAGATTCCTCGTGAAGAAATTCAAAAAATA
GAGGCAATAATAAAAAAAAATATTTTAGATTTAGATTGTGATTATACTATTACCATTTGT
GGCAGTTACAGGCGCGGCGCATCACAAAGTGGCGACATTGACGTGCTAGTTACACACCCA
ACGATGAAGTTGGATAAGGAAAAAATCGGTGAAAAGCTTTTGAAAGAAATAAAAGAGGCT
TTAGGAGAACTCATTGTTGACGTGATATCAATGGGTGCGACGAAGTTTATGGGCGTCTGT
CGTCTGTCAGACGGACATTTAAACCGGCGTTTGGACATTCGGCTCATACCAAATGAACAG
TACCACTGCGCCGTCCTTTACTTCACCGGAAGTGACGTTTTCAATAAAAATATGAGAGCA
CATGCTTTGGAAAAACGATTTACACTGAATGAATACTCCCTGCGACCGATCGGTGTAACC
GGTGTCCACGGACAGCCGGTGCCGATCACATCAGAAGAAGACATTTTCGACTACATCGAC
TATCCTTACAAGAAACCGGAAGAACGAAATCTGTAG
Protein sequence:
MSKRKNPSTNNNVNADFCDFLMELADYEKNVSRNIHKYNAYRKAASVLAAHHKRIESGQQ
AKKLNGVGEKISKKIDEFLQTGKLRKLENIHNDEKAQAISLLTRVSGIGPVKAADLIDKG
IKTLEDLNKNQDLLNHHQLIGLKYFENFEEKIPREEIQKIEAIIKKNILDLDCDYTITIC
GSYRRGASQSGDIDVLVTHPTMKLDKEKIGEKLLKEIKEALGELIVDVISMGATKFMGVC
RLSDGHLNRRLDIRLIPNEQYHCAVLYFTGSDVFNKNMRAHALEKRFTLNEYSLRPIGVT
GVHGQPVPITSEEDIFDYIDYPYKKPEERNL