| New model in OGS2.0 | DPOGS200616 |
|---|---|
| Genomic Position | scaffold1611:- 85191-87191 |
| See gene structure | |
| CDS Length | 2001 |
| Paired RNAseq reads | 629 |
| Single RNAseq reads | 1590 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA008977 (3e-158) |
| Best Drosophila hit | CG5808 (4e-131) |
| Best Human hit | peptidyl-prolyl cis-trans isomerase-like 4 (1e-93) |
| Best NR hit (blastp) | CG5808 [Drosophila melanogaster] (1e-163) |
| Best NR hit (blastx) | peptidyl-prolyl cis-trans isomerase cyp6 [Culex quinquefasciatus] (1e-142) |
| GeneOntology terms | GO:0003729 mRNA binding GO:0003676 nucleic acid binding GO:0000166 nucleotide binding GO:0006457 protein folding GO:0003755 peptidyl-prolyl cis-trans isomerase activity GO:0071013 catalytic step 2 spliceosome GO:0000398 nuclear mRNA splicing, via spliceosome GO:0071011 precatalytic spliceosome |
| InterPro families | IPR015891 Cyclophilin-like IPR002130 Peptidyl-prolyl cis-trans isomerase, cyclophilin-type IPR000504 RNA recognition motif domain IPR012677 Nucleotide-binding, alpha-beta plait |
| Orthology group | MCL12261 |
Nucleotide sequence:
ATGTCAGTGGTAATTGAAACCACACTGGGAGATATTACTGTAGATCTTTATTTAGATCAA
CGACCAGTAACATGTTTAAACTTCTTGAAGTTGTGCAAGATGAAATACTATAACTACAAT
TTGTTTCATACAATACGAAACGGTTTCATTGCTCAAACTGGTGATCCCAGTGGTGAAGGA
TCGGGAGGACAATCAATATGGGGTATTCTAGAAGGACCGCACAAACGCTTTTTCTCTGGC
GAGAAAATGCCCAAGATTCGTCACACCGACGCTGGTTTGCTATCCATGGTATGTACCGAT
GATATGATGGTAGGTTCGCAATTCTTTTTCACACTTGCGCCCGATTTAAACTCTTTAGAT
GGAACACATTGTGTAATAGGTGAAGTAACTGAAGGGCATGATGTACTAACTAAGCTTAAT
GAAGTAATATGTGATGAATCCTATCGTCCATACAGAGATGTAAGAATTACACATACAGTT
GTACTTGAAGATCCTTTCAACGACCCTCCCGGGTTGAGAGCTCCATCAAGGTCGCCATCT
CCAAGTGCAGAACGCTTAAAGGGTGGTAGAATTGCTCCAGATGAAGAAATTGATGAAGCA
CAGGGCAAAACTGCCGAGGAAATCCAAGAAATGATTGAAGAAAAGGAAGCAAAGGCTAGA
GCAACAATTTTAGAAATTGTTGGTGATTTACCTGATGCTGAAATAGCACCTCCTGAAAAT
GTTTTATTTGTATGTAAACTCAATCCAGTCACAACAGATGAAGACTTGGAAATAATATTT
AGTCGTTTTGGTAAAATAGTAAGCTGTGAAGTTATTAGAGACAAAAAGACTAGTAACTCT
TTACAATATGCTTTTATTGAATTTGACAATAAAAAATCTTGTGAAGATGCTTACTTTAAA
ATGGACAATGTGTTGATTGATGATCGCCGAATTCATGTTGACTTTTCACAGTCTGTATCT
AAAATGAGATGGTTAGGGAAAGGTCGAGGTGTTCAGTATTTTGATGACGATTCAAACAAA
AAATCTCAAAGAAACCCAAATAGAAATAGTCACAGACAACAACAAACTGATGATACAAAT
CATAGGAGGCGTTATGAAAATGATAGAAATGGTAAAGAAAGTCATAGACATGATAAAGAA
AGAGACAGTTATAGGGACCACAAAGATAAGCCAAAAGATAAAAATGTTAGGAGTAGTGAT
AGAGAAAGTAAAATATATAACCGAAAGCGTAGTAGAAGTCGATCTAGAAGAGATAATTCA
AAAGATAGAATACACGAAAGAAGACAAGATAAGACGAGATATCCTAAAGATATGAGTAAG
TCTAGAGAGGACAGAGAAAAAAAGAAAGAATCACATGAATATGTTGAGAATAAAAGGGAT
AATCGTAATTATTATAATTCAAGATCATCACCGAGTAAAAAATTTAGAAAAGAATCACCA
TCAAAACGGCATAGAGAGAGAGAATTAAGCAGGAGTAGAGATAGGAGTGACAGAAACAGA
CAAGAAAATAATGGTGTTCATCCAAGGTATAGAGAATCTAGTAATTATACACACAATAAA
GAAAGTAAAAGTGAAAAAATTAAAGAAAATACTAAAGGTATAGAATCAAAGACACCATCA
CCAGTTACGAAGGAAAATAAAACACAATCCTCAAAATCACAAAAGAAAACCAAAAAGAGT
TGCAAAGAGAAGACAGAAGACTCAAAATCCAAAAAGAAGGAACGTAAAACTAAAAAACGT
AAGCGCTCAACATCATCTTCAGAATCATCGGATTCAAGTTCTAGCAGTGATAGCAGTTCG
AGTGAAAGTGATAGAAGGAAAAAGAAAATCAGAAGAAAAAAGAGAAAATATTCAACATCT
AGCAGTAGTTCTGAGAGCACCTCAAGCAGCTCATCAAGCAGTTCGGACACCAGTACAGCG
TCAAGTTCCAGTACCGATAGTAGCTGCAAAAAGAAACGTCAAAAGAAAAAACTTGTGAAG
AAAAGCAAAAAGAAGTTATAG
Protein sequence:
MSVVIETTLGDITVDLYLDQRPVTCLNFLKLCKMKYYNYNLFHTIRNGFIAQTGDPSGEG
SGGQSIWGILEGPHKRFFSGEKMPKIRHTDAGLLSMVCTDDMMVGSQFFFTLAPDLNSLD
GTHCVIGEVTEGHDVLTKLNEVICDESYRPYRDVRITHTVVLEDPFNDPPGLRAPSRSPS
PSAERLKGGRIAPDEEIDEAQGKTAEEIQEMIEEKEAKARATILEIVGDLPDAEIAPPEN
VLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDKKTSNSLQYAFIEFDNKKSCEDAYFK
MDNVLIDDRRIHVDFSQSVSKMRWLGKGRGVQYFDDDSNKKSQRNPNRNSHRQQQTDDTN
HRRRYENDRNGKESHRHDKERDSYRDHKDKPKDKNVRSSDRESKIYNRKRSRSRSRRDNS
KDRIHERRQDKTRYPKDMSKSREDREKKKESHEYVENKRDNRNYYNSRSSPSKKFRKESP
SKRHRERELSRSRDRSDRNRQENNGVHPRYRESSNYTHNKESKSEKIKENTKGIESKTPS
PVTKENKTQSSKSQKKTKKSCKEKTEDSKSKKKERKTKKRKRSTSSSESSDSSSSSDSSS
SESDRRKKKIRRKKRKYSTSSSSSESTSSSSSSSSDTSTASSSSTDSSCKKKRQKKKLVK
KSKKKL