| New model in OGS2.0 | DPOGS208858 |
|---|---|
| Genomic Position | scaffold159:- 203911-204414 |
| See gene structure | |
| CDS Length | 504 |
| Paired RNAseq reads | 27 |
| Single RNAseq reads | 380 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA008088 (1e-39) |
| Best Drosophila hit | snRNP-U1 (2e-31) |
| Best Human hit | U1 small nuclear ribonucleoprotein C (2e-26) |
| Best NR hit (blastp) | PREDICTED: similar to CG5454 CG5454-PA [Tribolium castaneum] (2e-38) |
| Best NR hit (blastx) | PREDICTED: similar to CG5454 CG5454-PA [Tribolium castaneum] (9e-38) |
| GeneOntology terms | GO:0030532 small nuclear ribonucleoprotein complex GO:0005634 nucleus GO:0000398 nuclear mRNA splicing, via spliceosome GO:0003729 mRNA binding GO:0005692 U11 snRNP GO:0005685 U1 snRNP GO:0008270 zinc ion binding GO:0000381 regulation of alternative nuclear mRNA splicing, via spliceosome GO:0007052 mitotic spindle organization |
| InterPro families | IPR013085 Zinc finger, U1-C type IPR003604 Zinc finger, U1-type IPR000690 Zinc finger, C2H2-type matrin |
| Orthology group | MCL16509 |
Nucleotide sequence:
ATGCCTAAATATTATTGTGACTATTGTGATACTTACCTTACTCATGACTCACCAAGTGTA
AGGAAAACACATTGTACAGGAAGAAAGCATAAGGACAACGTTAAGTTCTATTATCAGAAA
TGGATGGAAGAACAGGCCCAGCACCTTATCGATGCAACGACTGCTGCATTCAAAGCCGGT
AAAATTGCGCAAAATCCATTTGGGGGTCCTAAAGGCGCGAACATTCCGCCTCCGTGGGAT
CCTTCTGTTATGGGTCCCGGAGGTCCGCGGCCACCCGTACCTACGCCAGGAGGACCTCCT
GGAATGATACCTCCTCCAGCTATGGGTCCAGGGGGACCGATGCCTCCTATGATGATGGGT
CCTCATGGACCTATGGGACCAATGGGTATGGGTATGGGCATGAGGCCACCAATGATGGGA
CCATTAATGGGACCTATGGGACCAATGGGTCCTATGGGCCAGATGCGACCACCGTTAATG
AATGGACCGCCTATGAATAAATAG
Protein sequence:
MPKYYCDYCDTYLTHDSPSVRKTHCTGRKHKDNVKFYYQKWMEEQAQHLIDATTAAFKAG
KIAQNPFGGPKGANIPPPWDPSVMGPGGPRPPVPTPGGPPGMIPPPAMGPGGPMPPMMMG
PHGPMGPMGMGMGMRPPMMGPLMGPMGPMGPMGQMRPPLMNGPPMNK