New model in OGS2.0 | DPOGS212970  |
---|---|
Genomic Position | scaffold1169:- 44839-55335 |
See gene structure | |
CDS Length | 4638 |
Paired RNAseq reads   | 7168 |
Single RNAseq reads   | 16673 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA011615 (0.0) |
Best Drosophila hit   | topoisomerase 2 (0.0) |
Best Human hit | DNA topoisomerase 2-alpha (0.0) |
Best NR hit (blastp)   | DNA topoisomerase 2 [Bombyx mori] (0.0) |
Best NR hit (blastx)   | DNA topoisomerase 2 [Bombyx mori] (0.0) |
GeneOntology terms    | GO:0006265 DNA topological change GO:0005634 nucleus GO:0003918 DNA topoisomerase (ATP-hydrolyzing) activity GO:0000400 four-way junction DNA binding GO:0016590 ACF complex GO:0008623 chromatin accessibility complex GO:0007067 mitosis GO:0005626 insoluble fraction GO:0007126 meiosis GO:0005625 soluble fraction GO:0003729 mRNA binding GO:0003677 DNA binding GO:0005694 chromosome GO:0005737 cytoplasm GO:0051310 metaphase plate congression GO:0000819 sister chromatid segregation GO:0005524 ATP binding GO:0006342 chromatin silencing GO:0000182 rDNA binding GO:0003696 satellite DNA binding GO:0007076 mitotic chromosome condensation GO:0007052 mitotic spindle organization |
InterPro families    | IPR018522 DNA topoisomerase, type IIA, conserved site IPR001241 DNA topoisomerase, type IIA, subunit B/N-terminal IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal IPR001154 DNA topoisomerase II, eukaryotic-type IPR003594 ATPase-like, ATP-binding domain IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup IPR013759 DNA topoisomerase, type IIA, subunit B/N-terminal, alpha-beta IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta IPR020899 Arginine repressor, C-terminal IPR013757 DNA topoisomerase, type IIA, subunit A, alpha-helical IPR013760 DNA topoisomerase, type IIA, central IPR020568 Ribosomal protein S5 domain 2-type fold IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 |
Orthology group | MCL11650 |
Nucleotide sequence:
ATGGCTGATATTAAGTCAATGTTCAATAGAATGAGCAATGGCACTCAGAATGGTACATCA
GAGGCTGCCAAGGGCCAGAAAGGTGCTATTGAAAAAATATATCAGAAGAAATCGCAATTG
GAACATATACTGTTACGACCCGACACTTACATAGGGTCGGTTGAACGTTCCACAGAAACA
ATGTGGGTCTATGATAAAGAGAAAGAGTGTATGGTCCAACGAGAATTGACATATGTACCA
GGTTTATATAAAATATATGACGAAATATTAGTGAACGCTGCCGATAATAAGCAAAGAGAT
CCTAAAATGGATGTCATCAAAATAGACATTAATCAAGAACAAAATACAATATCAGTATAT
AACAACGGATGCGGGATCCCTGTGGTTATGCACAAGGATGAGAAAATGTTTGTGCCCACC
ATGATCTTTGGACATTTATTGACATCTTCCAACTACAATGACGAGGAAGAGAAAGTGACG
GGAGGAAGAAATGGATACGGAGCAAAACTATGTAACATTTTCTCAACAAAGTTCACAGTG
GAGACCGCATCCAAACAATACAAGAAACATTTCAAGCAGACATGGGGTTCCAACATGACC
AAGGCCTCGGAACCCAAAGTTAAGGAGTCCGGTAAAGATGACGATTTTACAAAAGTGACT
TTTAGCCCTGATTTGGCTAAATTTAAAATGGATAAGTTAGAAGACGACATCGTAGCGTTG
ATGTCACGGAGAGCCTACGACGTGGCCGCCTCTACGACGGGGGTCAAAGTTTATCTTAAT
GGAGAAAGATTGAAAATAAATAAGTTCAAGGACTATATCGATCTATACATTAAAGGTAAA
GAGGACGAGAACGGCCAACCCCTGAAGGTTGTATACGAGAAAGTTAACGACCGGTGGGAA
GTGGCTCTGACTCTATCCGACAGGGGCTTCCAACAAGTGTCCTTCGTGAACTCCATCGCC
ACGACGAAAGGAGGCAAACACGTCGACACTGTAGCCGACAGTGTGGTCAAGAATGTATTA
GAAGTACTGAAGAAAAAAAACAAAGGCGGCGTTAACATCAAACCGTTTCAGGTTAAAACT
CACATGTGGGTATTCATAAATTGTCTGATCGTCAACCCGACCTTCGACTCACAGACCAAA
GAAAACATGACTCTGCAGGCCAAGAGTTTCGGTTCCAAATGTAATTTCTCCGAGAAGTTT
ATTAATGCGGTGACAAAATCGGGTTTAGTAGAATCTGTCCTCACGTGGGCCAAGTTCAAG
GCGCAGAATGAATTAGTTAAGGCGTCTGGAAAGAAACAGAGTAAGTTAAAGGGCATACCG
AAACTAGAAGACGCTAATGACGCGGGTACCAAGAATGCTCATCTATGCACGTTAATCCTC
ACCGAGGGAGATTCGGCCAAAACTTTAGCCGTTTCTGGACTTAGCGTAGTCGGTAGGGAT
CATTACGGCGTCTTCCCACTGAAGGGTAAACCGCTCAACGTTAGAGACGCATCACACAAG
CAGGTTCTTGAAAATGTTGAAATTAATAATTTAATAAAGATCGTAGGCTTACAGTACAAG
AAGAAATATAACAGTGTGGATGACTTGAAGTCGTTGAGGTACGGCAAGGTGATGATTATG
GCGGATCAGGATCAAGACGGGTCTCATATAAAAGGTCTCATCATTAACTTCATACACCAC
AACTGGCCGGAGTTACTCAAACTACCGTTCTTAGAGGAATTCATTACGCCCATAGTGAAA
GCTACGAAGAAAGATAAGGAATTCTCATTCTATTCCTTGCCAGAGTTCGAAGAGTGGAAG
AGGGAAACCGACAACCATCACACTTACAATATCAAATACTACAAAGGTTTGGGTACCTCC
ACATCCAAGGAGGCTAAAGAATACTTCCAGAATATGGACAGGCATAGGATCAGATTCAGA
TACAGCGGGCCCACGGACGATCATCACATCGAACTGGCCTTCTCAAAGAAAGGCGCCGAC
CAACGCAAGGAGTGGCTCACGAATCATATGGACGAAGTTAAAAGGAGGAAGGAGATCGGT
CTACCGGAAAGATATTTATATACCAAGGAGACTAAAGCCGTCACTTATTCAGATTTCGTC
AATTTAGAGCTGGTTCTCTTTTCTAACGGCGACAATGTCAGATCCATACCATCAATGATG
GATGGTCTGAAGCCTGGCCAGCGTAAGGTGATATTTACGTGCATCAAACGTAACGACAAA
CGAGAGGTCAAAGTGGCTCAGCTGGCTGGTTCCGTAGCAGAGCACTCGGCGTACCATCAC
GGTCGAAGGATGGGCCCTGAGTTTATAGCGCGACACTTTCACCATTCCCTGGCTATGACG
ATCGTTAACCTGGCCCAGAACTACGTGGGATCAAACAACATAAACCTGCTGGAACCGCGC
GGTCAGTTCGGTACGAGGCTCTGTGGCGGCAAGGACTCGGCCAGCCCGAGATACATCTTC
ACGCTCATGTCGCCACTCACGAGACTAGTCTTCCATCCTCATGACGATCCGCTGCTAGTG
CACGAATTCGAAGACAATCAGAAGATCGAACCCATACATTACGTACCCATCCTGCCCATG
GTCCTAGTGAACGGTGCTGAAGGGATCGGTACAGGGTGGTCTACTAAAATACCAAACTAC
AATCCGAGAGACATTGTAGCTAATATCCGTCGAATGCTTGATGGCGAAGATCCAGTGCCA
ATGCATCCCTGGTACAAGAACTTCCGCGGAACTATCGAGAGCTTCGGCGACAAATACGTC
ATTTCCGGCGAGGCGGCCATTTTGCCAAACGAAAAGATAGAAATCACAGAGCTTCCTGTT
GGCACTTGGACGCAGAATTATAAGGAGAACGTGCTAGAGCCTATGCTCGGTACAGACAAA
GTTAAACCTTTGATATCCGAATACAGGGAATATAACACGGACACGACTGTGAGGTTCGTA
GTGACCTTGCTGCCGGGCAAGCTGGCCGAGGTGGAGGCGGAGGGCATACACAAGGTGTTC
AAACTGCAGACTACGATATCAATGACGTGCATGAACGCGTTCGATCACAACAACTGTCTC
AAGAAGTATGATAAAGTAGAGGAAGTGCTACACGAGTTCTACGGTATACGTCTACGTTAC
TACGCTCGCCGTAAGGAATGGCTAGAGGGTCAGCTGCAGGCGGAGGCGGACAAGCTCTCC
AACCAGGCCAGGTTCATACTGGAGAAGTGCGACAAGGGACTCGTCGTGGAGAATAAGAAG
AGAAAGGTTCTGGTGGAAGAACTCATCAAGAGAGGATATGCGCCCGATCCTATCGCTGAT
TGGAAGAAACGAGCGAGTAAAATGCAGGGATTGACCGCCGTGGAAGAGGAACCGGAGTCC
GAGGAGGAGTTGGAACAAGAGGAAGTGAAGGGGAAATCAGCTGATCCTGAAAAAGTGTTC
CAGCAACTGAAGGAAGTAAAGAAATTCAATTATCTCCTGGGAATGTCCATGTGGATGTTG
ACCAAGGAGAAGAAAGACGAGCTGCTCAAACAACGAGATCAAAAACTCACGGAGCTGGAA
ACGCTGAAAGCGAAGACTCCGGCCATGCTGTGGCGAGAGGATCTGGATTCCTTCCTCATT
AAACTCGACGAGGTGGAAGAACAAGAGCGACTCGACGAGAGCAACACGAACAAGAAAACA
TCAAAGGCATTGGCCGCGAACAAAAAGAATCGCAAATCGATAATGGATATAGTGCCTTCC
GACAACGGCAGACGAGTGGAGCCGAAGATATCAGAAGATCTCATCAAGAGAATACAAGCG
GCGGAGAAGGCGAAGATAAAGAAGGAGGTCAAGAAGGAATACGACCCGGACGATCCGACC
GGCGTGAGTCCCGCCAGCGGAGAGAAGAAGCCGAAGGGACGAGTGAAGAAGGAGAAACCT
GAGAAAACAGAAAAGACAGATAAACCCGATAAAGAGGGTCTCAAACAAACCAAATTAACG
TTCAAGAAGGAGCCCAAAAAGAAGAAGGCTGCTCTTAGTAACGATAGCTCCGACGAAATG
TCCGTAACATCGGACGTGGAGATAACGTCCGCGCCCGCGCCCAGAGACAGGACGATCGTC
AGAAGAGCCGCTACTAAGGTACAAAAGTACAAGGACGGTTCGGACGAGTCGTCGGATTCA
GAGCCAGAGCTGCTAGACAACAAGATCGACTCTGATAGAGACGTTCCCGAACCGATGTCC
GATGACGATTTCACCGTCAAGAAGAATAATAAGAAACCTGCTGAAATGGACTCCGATTGT
CTATTCGATTCGTTAATCGAGGACACCAAGAAGGAGGAGTCGGCGAAAAATAATGAACCG
ATACCAACAACGGTCCTGTCGAGTGACGACGATTCAGTTCAAGAAACTGCTCCCAAGAAG
AAGCAGACCAAGAGGAAGTTGATGAACGTCGAGAAAGAGAAGCCTAAAGCGAGGAAGAGG
CCGGCCAAGGTGGTGTTCAGCCACAGCACGGACGGGGAGGACGAGGAGGCCTTCGAGACT
AAAAAGACAAAGAAGAAGGCCAATCCGAAAAAACGACAGAAGAAAGCCGACTCGGACAGC
TCTTGCGAAGAAATTACTCGCGGGAGAGATAAGGACAAGGTGTACCGCTTCAGCGACGGA
TCCGACAGCGATCTATAA
Protein sequence:
MADIKSMFNRMSNGTQNGTSEAAKGQKGAIEKIYQKKSQLEHILLRPDTYIGSVERSTET
MWVYDKEKECMVQRELTYVPGLYKIYDEILVNAADNKQRDPKMDVIKIDINQEQNTISVY
NNGCGIPVVMHKDEKMFVPTMIFGHLLTSSNYNDEEEKVTGGRNGYGAKLCNIFSTKFTV
ETASKQYKKHFKQTWGSNMTKASEPKVKESGKDDDFTKVTFSPDLAKFKMDKLEDDIVAL
MSRRAYDVAASTTGVKVYLNGERLKINKFKDYIDLYIKGKEDENGQPLKVVYEKVNDRWE
VALTLSDRGFQQVSFVNSIATTKGGKHVDTVADSVVKNVLEVLKKKNKGGVNIKPFQVKT
HMWVFINCLIVNPTFDSQTKENMTLQAKSFGSKCNFSEKFINAVTKSGLVESVLTWAKFK
AQNELVKASGKKQSKLKGIPKLEDANDAGTKNAHLCTLILTEGDSAKTLAVSGLSVVGRD
HYGVFPLKGKPLNVRDASHKQVLENVEINNLIKIVGLQYKKKYNSVDDLKSLRYGKVMIM
ADQDQDGSHIKGLIINFIHHNWPELLKLPFLEEFITPIVKATKKDKEFSFYSLPEFEEWK
RETDNHHTYNIKYYKGLGTSTSKEAKEYFQNMDRHRIRFRYSGPTDDHHIELAFSKKGAD
QRKEWLTNHMDEVKRRKEIGLPERYLYTKETKAVTYSDFVNLELVLFSNGDNVRSIPSMM
DGLKPGQRKVIFTCIKRNDKREVKVAQLAGSVAEHSAYHHGRRMGPEFIARHFHHSLAMT
IVNLAQNYVGSNNINLLEPRGQFGTRLCGGKDSASPRYIFTLMSPLTRLVFHPHDDPLLV
HEFEDNQKIEPIHYVPILPMVLVNGAEGIGTGWSTKIPNYNPRDIVANIRRMLDGEDPVP
MHPWYKNFRGTIESFGDKYVISGEAAILPNEKIEITELPVGTWTQNYKENVLEPMLGTDK
VKPLISEYREYNTDTTVRFVVTLLPGKLAEVEAEGIHKVFKLQTTISMTCMNAFDHNNCL
KKYDKVEEVLHEFYGIRLRYYARRKEWLEGQLQAEADKLSNQARFILEKCDKGLVVENKK
RKVLVEELIKRGYAPDPIADWKKRASKMQGLTAVEEEPESEEELEQEEVKGKSADPEKVF
QQLKEVKKFNYLLGMSMWMLTKEKKDELLKQRDQKLTELETLKAKTPAMLWREDLDSFLI
KLDEVEEQERLDESNTNKKTSKALAANKKNRKSIMDIVPSDNGRRVEPKISEDLIKRIQA
AEKAKIKKEVKKEYDPDDPTGVSPASGEKKPKGRVKKEKPEKTEKTDKPDKEGLKQTKLT
FKKEPKKKKAALSNDSSDEMSVTSDVEITSAPAPRDRTIVRRAATKVQKYKDGSDESSDS
EPELLDNKIDSDRDVPEPMSDDDFTVKKNNKKPAEMDSDCLFDSLIEDTKKEESAKNNEP
IPTTVLSSDDDSVQETAPKKKQTKRKLMNVEKEKPKARKRPAKVVFSHSTDGEDEEAFET
KKTKKKANPKKRQKKADSDSSCEEITRGRDKDKVYRFSDGSDSDL