| New model in OGS2.0 | DPOGS204565 |
|---|---|
| Genomic Position | scaffold2158:+ 13209-18256 |
| See gene structure | |
| CDS Length | 3114 |
| Paired RNAseq reads | 4434 |
| Single RNAseq reads | 10442 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA001540 (0.0) |
| Best Drosophila hit | Upf1 (0.0) |
| Best Human hit | regulator of nonsense transcripts 1 (0.0) |
| Best NR hit (blastp) | PREDICTED: similar to nonsense-mediated mrna decay protein 1 (rent1) [Nasonia vitripennis] (0.0) |
| Best NR hit (blastx) | PREDICTED: similar to nonsense-mediated mrna decay protein 1 (rent1) [Nasonia vitripennis] (0.0) |
| GeneOntology terms | GO:0004386 helicase activity GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay GO:0005737 cytoplasm GO:0005524 ATP binding GO:0008270 zinc ion binding GO:0003677 DNA binding GO:0016246 RNA interference GO:0035195 gene silencing by miRNA |
| InterPro families | IPR018999 RNA helicase UPF1, UPF2-interacting domain IPR006935 UvrABC complex, subunit B |
| Orthology group | MCL13589 |
Nucleotide sequence:
ATGAGTGTCGACGCGTATGGCCCAAGTTCTCAAACACTCACATTCTTAGAAACCGAAGAA
GCAGATCTAATCGGTGCTGACACACAAGGATCTGAGTTTGAATTTACAGACTTTACATTA
CCATCTCAGAGCCAAACACAAGCATCACAACACGATCATGGAATAACTTCATCCAACCAA
ATTAATGGACTCGGTCGTGGAGACCTTCATTCGAAAGTATCAAGTGTAGCTAATGCAATT
GCGGAACTACAATTCGAAGAGGAGGATGAAGCCTTGTATAGTAGCAAGGAACTGCCAGAA
CATGCTTGCAAGTATTGTGGCATTCACGATCCCGCCACAGTTGTTATGTGTAACATCTGC
AACAAGTGGTTTTGCAATGGGCGCGGAAACACTTCTGGATCTCATATCATTAATCATCTA
GTGAGAGCTAAACATAAAGAAGCAGCACTTCATAGAGATGGCCCATTGGGAGAAACATTA
TTGGAATGCTACTCATGTGGGGCTCGTAATGTTTTTGTTCTCGGTTTTATACCAGCAAAA
GCCGACTCAGTTGTTGTCCTTCTGTGCCGACAGCCATGTGCCGCCCAAAGCTCTCTTAAG
GATATGAACTGGGATCAAGAGCAATGGAAGCCACTAATTTCTGACCGTGCATTTCTGTCT
TGGCTTGTAAAAGTGCCTTCTGAAGCTGAACAAATGAGGGCAAGACAAGTGACTCCTCAA
CAAATTGGACGTCTTGAAGAACTATGGCGTGATAATGTCGATGCTACTTTCCAAGATTTA
GAAAAACCGGGTGTAGACGAGGAGCCCCATCAAGTACTCCTGAGATATGAGGATGGATAT
CAATATCAGAATATATTTGGTCCTCTCGTTAAACTAGAAGCTGATTACGACAAGAGGCTC
AAAGAGTCACAAACCCAGGAAGGCATAGAGGTGCGTTGGGATGTGGGTCTCAATAAGAAA
ACTATTGCATATTTCACCCTGGCCAAAACAGATAGTGACATGAAACTTATGCATGGAGAC
GAACTGAGATTGAGATATGTTGGTGAGCTACATAAAGCATGGTCTGGTGTTGGCCATGTC
ATTAAAGTTCCTGATAATTATGGTGACGACGTCGGTTTAGAACTGAAGAGTGGGGCCGGA
GCACCCCTTGAATGTACTTCCAACTTTGTTGTTGATTTTATATGGAAGAGTACATCATTT
GACAGAATGCAACTAGCTCTACGTAAATTTGCAGTAGACGATTCCTCAGTCTCTGGGTAC
ATCTATCGTCGTCTGCTAGGTCATGAGGTAGAAGAGGTATTGTTCCGCGTACACCTGCCG
AAACACTTCAGCGCACCGAACTTACCCGATCTTAACAGATCTCAGGTGTATGCAGTCAAG
CACGCACTCCAACGTCCATTGTCTCTGATCCAAGGTCCTCCGGGTACTGGGAAAACCGTT
ACATCTGCGACCATTGTATACCAGCTCGTACGCCAAAACGGTGGTCCTGTACTCGTATGC
GCTCCGTCCAACACTGCCGTAGACCAACTGACTGAGAAAATACATCGAACCGGTCTGAAA
GTCGTTCGTCTCTGTGCTAAATCCAGGGAGGCTATGGAATCTTCAGTTTCCTTCTTGGCC
TTACACGAACAGGCACGGGCCTTGGGCTCCGCTGATAGTGAACTTCGCAAGTTAACTAGG
CTGAAGGAGGAGGCTGGTGAATTGTCTGCGGCTGATGAGAGGAGGTACCGTGCGCTCCGT
AGAGCGGCCGAGAGAAGATTGCTTGACGCGGCCGATGTCGTATGTACTACCTGCGTCGGT
GCTGGCGATCCCAGGGTTGCACGGATGAGGTTCCAGTCCATCCTCATCGATGAAGGCATG
CAGTCTACGGAACCTGAGTGTATGGTGCCCGTAGTGCTTGGAGCGAGGCAATTAATCCTC
GTCGGTGACCATTGTCAGTTAGGTCCAGTGGTTATGTGCAAAAAAGCCGCCAAAGCCGGT
CTCAGTCAGAGTCTTTTTGAACGGCTCGTAGTTCTAGGCATTCGCCCCTTCCGCTTAGAA
GTGCAATATCGTATGCACCCAGAGCTCTCCCGCTTTCCGTCAGACTTCTTTTACGAAGGA
TCACTTCAGAATGGAGTAAGTGCGGAGGAGAGACGATTGCACAAAATCGATTTCCCATGG
CCAAGACCCGATAGGCCTATGTTCTTTTACGTTACTCAGGGTCAAGAGGAAATAGCTGGA
TCGGGAACATCGTACCTAAATCGAACGGAAGCCGCTAATGTTGAAAAGTTGACGACTCGC
TTCTTGAAAGCTGGTGTTCGTCCAGAACAAATCGGGATCATCACTCCGTACGAGGGTCAA
AGGTCATACCTCGTTCAGCATATGCAGTATCAAGGCAGTCTGCACGCTAAGCTATATCAA
GAGATCGAAGTCGCCAGTGTGGACGCTTTCCAGGGCCGGGAAAAAGATATCATAATAATG
TCCTGCGTCCGGTCCAACGAACATCAAGGAATCGGGTTTTTGAGCGATCCGCGTCGCTTG
AACGTGGCATTAACACGCGCCAAGTACGGCTTAATTGTGGTCGGGAATCCGAAAGTTCTC
AGCAAACAGCCGCTGTGGAACCACCTGCTAGCCTTCTACAAGGAGCGACGTGTGCTAACA
GAGGGACCTTTGTCTAATCTGAAAGAGTCGGCGATACAGTTCGCAAAGCCGAAGAAGTTG
GTGAACGCTCAGAATCCTGGCTCGCATTTCATGTCGACGTCGATGTTCGACGCTCGCGAG
GCGATGGTCCCGGGATCCGTGTACGATCGTGCCCGTCCTCCACGCGACCCGCTCGCCTAC
GTCGGCCACGAGCACGCGGCGTCGCTTCACGCTCCCGTCCCGCCGGCAGCTTTCGCCGCT
CACCGTCCGCAGCAACGCGCCCCGCCAGACGCGACGCGTTCCCGCCGTCGGCCGCCGCGT
CTCTCACAGGAGCCGTTGTCTCAACAGCCGCCGCTGTCACTGTCACAGGGAGCGTCGCAG
CCGGACTTCAGCCAGGAATCGTCCGCCCCGGACTGCCCGTCGCAGCCGGACGGGTTGCTG
TCCCAGGACTCCACGTACCAGGGAGGGTTCCGCGCGCGCTGTGCCCAGTACTGA
Protein sequence:
MSVDAYGPSSQTLTFLETEEADLIGADTQGSEFEFTDFTLPSQSQTQASQHDHGITSSNQ
INGLGRGDLHSKVSSVANAIAELQFEEEDEALYSSKELPEHACKYCGIHDPATVVMCNIC
NKWFCNGRGNTSGSHIINHLVRAKHKEAALHRDGPLGETLLECYSCGARNVFVLGFIPAK
ADSVVVLLCRQPCAAQSSLKDMNWDQEQWKPLISDRAFLSWLVKVPSEAEQMRARQVTPQ
QIGRLEELWRDNVDATFQDLEKPGVDEEPHQVLLRYEDGYQYQNIFGPLVKLEADYDKRL
KESQTQEGIEVRWDVGLNKKTIAYFTLAKTDSDMKLMHGDELRLRYVGELHKAWSGVGHV
IKVPDNYGDDVGLELKSGAGAPLECTSNFVVDFIWKSTSFDRMQLALRKFAVDDSSVSGY
IYRRLLGHEVEEVLFRVHLPKHFSAPNLPDLNRSQVYAVKHALQRPLSLIQGPPGTGKTV
TSATIVYQLVRQNGGPVLVCAPSNTAVDQLTEKIHRTGLKVVRLCAKSREAMESSVSFLA
LHEQARALGSADSELRKLTRLKEEAGELSAADERRYRALRRAAERRLLDAADVVCTTCVG
AGDPRVARMRFQSILIDEGMQSTEPECMVPVVLGARQLILVGDHCQLGPVVMCKKAAKAG
LSQSLFERLVVLGIRPFRLEVQYRMHPELSRFPSDFFYEGSLQNGVSAEERRLHKIDFPW
PRPDRPMFFYVTQGQEEIAGSGTSYLNRTEAANVEKLTTRFLKAGVRPEQIGIITPYEGQ
RSYLVQHMQYQGSLHAKLYQEIEVASVDAFQGREKDIIIMSCVRSNEHQGIGFLSDPRRL
NVALTRAKYGLIVVGNPKVLSKQPLWNHLLAFYKERRVLTEGPLSNLKESAIQFAKPKKL
VNAQNPGSHFMSTSMFDAREAMVPGSVYDRARPPRDPLAYVGHEHAASLHAPVPPAAFAA
HRPQQRAPPDATRSRRRPPRLSQEPLSQQPPLSLSQGASQPDFSQESSAPDCPSQPDGLL
SQDSTYQGGFRARCAQY