| New model in OGS2.0 | DPOGS209940 |
|---|---|
| Genomic Position | scaffold3554:+ 32-10389 |
| See gene structure | |
| CDS Length | 3750 |
| Paired RNAseq reads | 678 |
| Single RNAseq reads | 3730 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA001833 (2e-119) |
| Best Drosophila hit | Dicer-1 (3e-100) |
| Best Human hit | endoribonuclease Dicer isoform 1 (7e-64) |
| Best NR hit (blastp) | GM23619 [Drosophila sechellia] (2e-172) |
| Best NR hit (blastx) | PREDICTED: similar to dicer-1 [Nasonia vitripennis] (2e-111) |
| GeneOntology terms | GO:0003725 double-stranded RNA binding GO:0016443 bidentate ribonuclease III activity GO:0030422 production of siRNA involved in RNA interference GO:0016246 RNA interference GO:0005515 protein binding GO:0004386 helicase activity GO:0005524 ATP binding GO:0035196 production of miRNAs involved in gene silencing by miRNA GO:0035087 siRNA loading onto RISC involved in RNA interference GO:0016442 RNA-induced silencing complex GO:0031054 pre-microRNA processing GO:0035195 gene silencing by miRNA GO:0042078 germ-line stem cell division GO:0005737 cytoplasm GO:0005634 nucleus GO:0045448 mitotic cell cycle, embryonic GO:0007279 pole cell formation GO:0033227 dsRNA transport GO:0007367 segment polarity determination GO:0048813 dendrite morphogenesis |
| InterPro families | IPR003100 Argonaute/Dicer protein, PAZ IPR001650 Helicase, C-terminal IPR005034 Dicer double-stranded RNA-binding fold IPR016024 Armadillo-type fold IPR011989 Armadillo-like helical |
| Orthology group | ND |
Nucleotide sequence:
ATGTCATCCTCATTGGCGAAGCCCAAAGAGGTTATAATAGAGTACAGTCCCCGTACCAAA
AGTCCAGAACTACCAGCTGATTATATACAGCTGGAGGAGTATATGAGGGAGTCCGTCAAA
AGTGCGCTGGACTTCATAAATGAGCACAGGTACGACCCCACGGAGATCTACGGTGAAGAT
ATGTATGAGGAGTTCAAAAATATCCCCGACCCCACCCTGGAGCCCAAGGCCATATTCAAG
CAGTTCCTATACGTGCTGGACCAACTCGGCCCTTACGCGGCGGACAAAGCGGCCTTCTCG
CTGCTCATCAAATTGGAAAAACTTAAAATCAAAGTGCCATACGAGAGACATTTCCTTCTT
TTGTGCGTGTGTACTTCCGTTTTCGTAAAGATAAGATGTTACACAGACAGCGTTCTGTCA
AAGTATGATAACGATTGGGAAAAGATAACCACATTCTTGACTCCGAAGATGCTCAGATTA
GCTGAGATTTTAGAGCAATTCTATCAGAACGAATCGTCAGATAAAGCAGAGAATGAAAAA
GACACGAAAAATTGCATCGAAGATAAAGTCGAAGACAATGTTAATAAAGTTATAAATGAT
AACTTGAATAGGGATAACACAAACGATGTCTCAGATCAGTCCCACGAGGCGAAAGCAGAT
GTATCGAAAACAAACGAGCTTTTAAATGAAATAGAAAAATGCGATTTCGTAACGCTTGGC
AACAAAATCGAAGACAGGGTTCATATGTACGAGGCTAATCTTAAAGACTATGAAGAAAAC
TATATGGGAGATAAAGTCACAAATAGCTTATGTTCGGTAGTTGAGAACAGAATTGGTGAA
AGTGACATAAAAGTTGATGACAGTCTCAAAACGGATAACGTTATTGATGTAATGAGTGAG
TCTCCGAAGTTCAAACGCCAGGGTCATAGGTCACGCGGTCGGGGTCGAGTGTCGAGGGTG
AACAAGGTCCAAATGCAGGCAAACCCAGACGCGCTCTGTGGTATTGTGTTCGTGAAGGAG
CCTTTGATGGCAAAGATATTGTTCATGTTAATTGTGGACTTATCTCGTTCCCGTCCCACG
CTGTCACATCTATGCGCCCAGTACTGTACTGATGAGGGAGACGCCAGAGAACATAGGCGA
CATGAGGAAGTGCTTAAGAAGTTCCGTATGCATGAATGTAATCTATTACTAGCGACGTCG
GTGCTCGAAGAAGGTATAGATCTGCCCCGGTGTAATCTCGTTGTGAGATGGGATTTACCA
CCTTCGTACCGGTCACATGCTCTGTGCCGAGGTCGAGCACGCGCTTGTCGTGCTGCGGTC
ACGTTACTGTCGAAGGCCGAAACGCATACTGATCGGCTGCTACATCATCTCGCTATTTAT
AGGGAGCTAGATCAGATAATAACAAGGAAATGCGGCTGCGGAATCCAATATGAACCTCCG
CAGGAGGAAGAACATCACGCGGATACAGTCGCTTTCATGGTTAAATCCTATACACCTTTA
GAGAATAAAGTCAAAAAACTTGAAACTATAGAAAGCGACGATATAAGCGATAATGTTAGC
CCGTGTTTAGAAAATTCTTTGAATGATACTAAAGAAAACGTAGTTTTAGGTGATAGTGAG
ATAGATAATTGTATTACAGAAAACGAAGACTGTACCAAAGATAATAATAGTAAGATATGC
CAAGACTCTGTAACAGAAAACGATGTTAATATTAAAGCACTTAGCGAAATCTTAATCAAT
GGTGACAAAGATAATCTTGGTGAACGTATGAAGGATTTACAAAATAAAATCGAATCAGAG
GCATCGATTGACGAAATATCCGAAGGAATCGCAAATATTGAAGTCAAAGATGATTCGGAC
GTAAACAAAACATTAGATTTTCGCGAAAACGACAAAAAACTAGAGAACGTAAAGTACGAA
TATAAAATTAAAAGTGGCAACGATGAAACTTTGGCGAGCGTGGATCTAAATACAGCTATA
GCATTGATAAACAGATACTGTGGTAAACTACCCTCGGATACGTTCACACGTCTAACGCCT
CAGTGGCGTACTGAGCGCGTTATTCTGAAAGATCGTCGAGGCGAGCCGCGCGACGCGTAT
GTATGTACACTGAGGATGCCGTTGAACTGTCCCGTGAAGTTTAACATCGTGGGTCATCCA
ATGCCAACGAGGTCGTTGGCTCGTCGGATGGCAGCTCTGTTGGCGAGTAGGGCGTTACAT
CGCGCTGGGGAACTTGACGATCAATTGCTACCAATAGGTAAAGAAAACTTCAAAGCCGCT
GAAATGGAGAACATAAATTTGGAAGAATCGGGTGAGAACGCGCGACCGGGGACCACGAAG
CGCAGACAGTATTACTATAAACGGACGGCATCTGCGTTCACGAATTGTAGACCAGTAGTG
GAATATACGGACGAAGACATAGAAAAAAAACCTCATACTTGCGATGAGGGAAAAGTTGAT
AATGAAACCAGATCACAAGCAGAGAAATTATATAATGATATACCAACCGAAACGAAGGTA
GTCCACTTAGTTGGTGCTATCCAAAATGCAGACCTCGGCGAGGAAGCCAGAGAAACCGCA
GCAGTACTCCTGCGAAGGTTGCTCAGCGCCGAGTTTTTTGAATTCTTCCCTAAACTCCCT
TTTGATCAGCAAGCAATGCTTAGAGAACAGTTGTTGCTCACTCTGCAAATGGATGTTAGT
CAACAGCTAAGACGAAAATTTGTTTTCTCGGACGTGCTTCGAGTGCGACGCCGCGGCATG
AAGCTGGCGGACACTACTCACAATAACTACTACGTAGTTCCGACCGTTAAGAAAACAACA
TCCGATGGCGCCACATGGATAGACATAGACTGGCCTTTCTTAGACTTAATATATCAGCAC
ACAGAAGAGAAGAGATGTTTAGAAATAGAGAAGCCCATGTTGTGGGAAGAAGAGAAGAAG
AAAGAGGAGAAGAAGGGAAAGAAGATTGAAAATCCGCTGCTTAAACCAGGAGAGGTATTC
GTGTTTGACGCGGAGAAGTACAAGGAAGCGGTCGTGACGCCCTGGTATAGAAATCAGGAT
CAGCCTCAATTCTTCCTGGTTGCGGAGATATGTTGGAACCTGACGCCGGAGTCGTCGTTC
CCGTCAGCGCAACACGCGAGTTTCCGCTCGTACTACAAGAGCAAATACGGCGCTGAACTG
ACACAGAGCAATCAGCCGTTACTCGACGTGGACCACACGAGCGCTAGGCTGAACCTGCTT
ACACCACGGTACGTGAATCGTAAGGGCGTGGCTCTACCTGTGTCGTCGGAGCGCACGCGT
CGCGCGAAACGTGATCGTCTCGATCAAAAACAGATTCTAGTGGCGGAGTTGTGTATGAGA
CATCCTTTCGCTGCGCCTCTATGGTGTGCAGCGGTTGCGTTACCATGCGCTTTGTACCGT
ATAAACGCGCTATTGCTGGCTGATGAAGTGAGGCGTGCTGTGTCAAGGGATGTGGGAGTT
GGGCAGCCTAGAGATGACATATCATGGCCGCCGTTGGATTTTGGATGGAGTTTAGCGGAG
GTTCTGAGCGCTGATTCTGACAAAGGGGATAAGAAAAAAGAAAATGAAATGAAGCCGATT
GTTGCGTTTAACCTCCTCTTATCCGGACAGGGCTTCGAAATAGGCACCTGGAGTAATGAC
ATGGCGTCCTCAATACCTTTGGACGAGCTGATGGAACCCCTACCACCAAACGTCACATTC
TGCACTTCAAGCTCCGGTGAGTTCAAATAA
Protein sequence:
MSSSLAKPKEVIIEYSPRTKSPELPADYIQLEEYMRESVKSALDFINEHRYDPTEIYGED
MYEEFKNIPDPTLEPKAIFKQFLYVLDQLGPYAADKAAFSLLIKLEKLKIKVPYERHFLL
LCVCTSVFVKIRCYTDSVLSKYDNDWEKITTFLTPKMLRLAEILEQFYQNESSDKAENEK
DTKNCIEDKVEDNVNKVINDNLNRDNTNDVSDQSHEAKADVSKTNELLNEIEKCDFVTLG
NKIEDRVHMYEANLKDYEENYMGDKVTNSLCSVVENRIGESDIKVDDSLKTDNVIDVMSE
SPKFKRQGHRSRGRGRVSRVNKVQMQANPDALCGIVFVKEPLMAKILFMLIVDLSRSRPT
LSHLCAQYCTDEGDAREHRRHEEVLKKFRMHECNLLLATSVLEEGIDLPRCNLVVRWDLP
PSYRSHALCRGRARACRAAVTLLSKAETHTDRLLHHLAIYRELDQIITRKCGCGIQYEPP
QEEEHHADTVAFMVKSYTPLENKVKKLETIESDDISDNVSPCLENSLNDTKENVVLGDSE
IDNCITENEDCTKDNNSKICQDSVTENDVNIKALSEILINGDKDNLGERMKDLQNKIESE
ASIDEISEGIANIEVKDDSDVNKTLDFRENDKKLENVKYEYKIKSGNDETLASVDLNTAI
ALINRYCGKLPSDTFTRLTPQWRTERVILKDRRGEPRDAYVCTLRMPLNCPVKFNIVGHP
MPTRSLARRMAALLASRALHRAGELDDQLLPIGKENFKAAEMENINLEESGENARPGTTK
RRQYYYKRTASAFTNCRPVVEYTDEDIEKKPHTCDEGKVDNETRSQAEKLYNDIPTETKV
VHLVGAIQNADLGEEARETAAVLLRRLLSAEFFEFFPKLPFDQQAMLREQLLLTLQMDVS
QQLRRKFVFSDVLRVRRRGMKLADTTHNNYYVVPTVKKTTSDGATWIDIDWPFLDLIYQH
TEEKRCLEIEKPMLWEEEKKKEEKKGKKIENPLLKPGEVFVFDAEKYKEAVVTPWYRNQD
QPQFFLVAEICWNLTPESSFPSAQHASFRSYYKSKYGAELTQSNQPLLDVDHTSARLNLL
TPRYVNRKGVALPVSSERTRRAKRDRLDQKQILVAELCMRHPFAAPLWCAAVALPCALYR
INALLLADEVRRAVSRDVGVGQPRDDISWPPLDFGWSLAEVLSADSDKGDKKKENEMKPI
VAFNLLLSGQGFEIGTWSNDMASSIPLDELMEPLPPNVTFCTSSSGEFK