| New model in OGS2.0 | DPOGS209191 |
|---|---|
| Genomic Position | scaffold683:- 10759-35702 |
| See gene structure | |
| CDS Length | 5616 |
| Paired RNAseq reads | 2889 |
| Single RNAseq reads | 6746 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA011542 (7e-18) |
| Best Drosophila hit | Dicer-2 (8e-176) |
| Best Human hit | endoribonuclease Dicer isoform 1 (6e-120) |
| Best NR hit (blastp) | dicer-2 [Bombyx mori] (0.0) |
| Best NR hit (blastx) | dicer-2 [Bombyx mori] (0.0) |
| GeneOntology terms | GO:0004386 helicase activity GO:0003725 double-stranded RNA binding GO:0016246 RNA interference GO:0030422 production of siRNA involved in RNA interference GO:0004525 ribonuclease III activity GO:0008026 ATP-dependent helicase activity GO:0005524 ATP binding GO:0035087 siRNA loading onto RISC involved in RNA interference GO:0030423 targeting of mRNA for destruction involved in RNA interference GO:0005737 cytoplasm GO:0006342 chromatin silencing GO:0005634 nucleus GO:0051607 defense response to virus GO:0033227 dsRNA transport GO:0016442 RNA-induced silencing complex GO:0070868 heterochromatin organization involved in chromatin silencing |
| InterPro families | IPR000999 Ribonuclease III IPR014001 DEAD-like helicase IPR001650 Helicase, C-terminal IPR003100 Argonaute/Dicer protein, PAZ IPR005034 Dicer double-stranded RNA-binding fold IPR006935 UvrABC complex, subunit B IPR001159 Double-stranded RNA-binding |
| Orthology group | MCL13450 |
Nucleotide sequence:
ATGTCTAAACGTAAACTAAACAATTTCTCTTTAAGTGACAAACTAAAAATTGTGAGTGGT
CTTGAATCCGGGAAATTAGGAAAGCAAATAATGAGTGAGTCTAGGTTAACAGAATCGGCC
TACCGTAAAATTATAAATATATGTCAGTGGTCAGAGGGCCAGGGAAGTATCAAGAGAAGG
CGGCTCTCTGAGTTTTCAGACGTTGAAAAGTGCTTATTCCCCGACATCACTCTCAATGTA
TCAACGCCAGTCTCCAAAGACTTGGTGCAGATTAGCGAAGACGTAACTACCTTCAGAAAG
TACACCAGAGACGATAATGTCCAAAACTGTGTGATCTGGTGTGATGACGGAATGGACAGT
GGAAATAAAGCCGGCAAATCACTCATTTTGGATAGAGAGTTGGAGAAAGTACCAAGTAAA
CAAGAGGCTTTGAAGGCATTAGAGACACTTCAAAAATTTTATAAAAATACGGCGTTTGAT
CCAACCATAATCAATAGAATTAATGAACTTGAAAAGTACACTCACAGATTACAAACAGCA
TCACAAAAGAAATTAATAAAATATCTCAAACCACATGATAAAATGGATGCGACCGACGAC
GAGATCCTTCCAAGATTGTATCAAACGCAGTTAGAAGAAATTGCAGTTAAAAAAAATACA
ATAATTTTTCTTCCGACAGGTTCGGGTAAAACTCACATTGCGATAAGTTTGATAAAGAGG
CTGAGAGATACATTGCAGAAGCCCTGGGGTTTCGGCGGGAAGAGATGTTTTTTTCTTGTC
AACACTGTGCCCTTAGTGGCTCAACAGAAAAAAACTATTGAACGATCATGTCCTGTGCAC
GGAGTGGCCGGTTTTAGCGGTGAAGACAACGTCGATTATTGGAATAAGGCGCAGTGGGAC
AGCGAACTTTCCAAATATCAGGTGATAGTGATGACGTGTCAGATCCTAAGCGACATGCTG
ACGCACCAGTACCTCCAGCTCAAGGACATCAGTCTTCTGATTTTCGATGAGTGTCATCAC
GGAGTCGAGGACCATCCTATGAGACTCATCATGAAGCACTTTCTCAACTGCCCCAAGAAC
GAACAACCCAGAGTTCTAGGTCTGACAGCGACACTGCTGAATAGTAACGTGAAGTTGAAT
AAGATACAAGAAACTATCCGGCACCTGGAGACAACCTTCCAGGCTTCCATAGCCACGGCC
GACGACATGGGAGAGGTCGCCATGTATTCAACGAATCCCAGAGAACAATTACTATACTAC
CGCCGCCCCTCGGCGACTCCCGCGGCCTCTGAAGCAGTGGACTTGTTGAGGCGACTCCAA
CAGATAGTGCTGCAGTTCGAACTGCCGAACACCGTTCAGAAACACGACATCGAGTTGGAA
CCTCACCAGCGAGACATCACCGGGGATCCCAAGAAGATAATAAAAGCTGTGAAGAACATG
ATTGAGTCCATGATATTGTCTATTTGTGATCTGGGAGTGTACGTTGGAGCCCTAGGGCTC
CTGGCGAACATCGTGGCCCTCGAGAGAAGGAAGCGGTGGGCCTCCAGTCAGGTCGAGGAA
CTCTTGTACACCGTCACCATAACGGCAGCGGTCGAAGCTCGCTCCGTTCTCTTGGATTCA
ATGAAAAATGAGAGCGGTTACGAAAAAATTATACGACACTCATCCGAGAAGACCGTCCAA
CTGCTGAATATATTGAAAGAATACAACCCGCGGACCCCCGTCAGGCGAGCGCTGAAGGTG
AATCAGGAGAGGAACGCCCTCTGTGGGTTGATCCTGACCCAGCAGCGGTTCACAGCCAAG
ATCCTGTACAACCTACTGAAGGACGTCGCGGAGGTGAACAAAGAGGAGTTCGGCTTCCTG
AAGCACGACTTCATAGTGGGCTTCAATATATCGCCGCTCTGCTCCACCAGGGAGCAGCAC
TATAACAAGAAGATCAGCGAACAAGCACTACTGAAGTTCAAGAACGGCGATCTGAACTGT
CTGATCGCGACCAGTGTGGTGGAGGAAGGACTGGACGTTCCTCAGTGCACTCTGGTGCTG
AGATACGACGTGCCCCTCGAGTACCGCTCCTACATCCAGAGCAAGGGTCGTGCGAGAAAC
AAGAAGGCCAATTTCGTGATATTAGTGGATGAAGAGAACAGACAGAAATTTAATAGTCAG
TACAGAGCGTTTCAGCAGGTGGAGTCGTACCTGAACGGGATGCTGTGCGGCGGTGAGGTG
AGGAACACTCCGTCTGAAGCCGAAGTCAAAGAGAATCTGAACGATGATGATTGTATCCCG
GCCTATAAAACGAGAAACGGAAATTCCTTATTCGCGGTGTCCGCTATAAGTCTGTTGAAC
CGCTACTGCTCAGTGCTGCCTCACGACCAGTATACCACGATCCTGCCCATGGTAATCCAG
GAGCCGGCGCAGGGGAACAAGACCATGGTCACCATCATCATGCCGATCGCCTGCCCCATC
AAGGAACCGGTCCAGGGCCGGCCCATGTCCAGTGTTAAGAATGCAAAGAGATCTGCGGCC
TTGAACGTGTGCATCAAACTTCATAAGGCCGGAGAACTGGACTACGAGACCCTACTGCCA
AAAGTGAAGGGGCTAATAGACTTTTCTACGACGGACGTGTCGTCGTGTTTTCCGAACTGG
CGCGATGAGACCGAGGTCTCGGACGAGGGTCCCCCGGGAACCAAGAAGAGGGTCAGGAAA
CATCCCGTACATTATCCCAAATGCCTGGACGGCCCGAAGACGAGGGACGAGCTCACCAAA
TGTTATCTCCACGTCATAAAGCTGGAGACAGCCTTCGACGAGCCGAGCGACGCCAGGGAG
AAGGCGTTGTACGACATGCTGCGGAGGAAGGAGGGCTACGGGTTTATCACGTTCGATAGG
CTGCCGGAGCTGTGCGCGTTCCCTATGTTCCTCACAGTGGGGGAGGTCCGCACTACGCTT
CAAGTTAACTACGCCGCCATCATCCTCGATACGTCTCACTTAGAACTCATCAAGCAGTTC
CATTTCTTCATATTCGATCAAGTGTTGGAGATCGCCAAAAAGTTTCTAGTGCACGACGGG
CGGGTCAACAACCTGTACGCGGTGCCCCTGAAATACGACAACGGTTACGATATAGACTGG
AACGTGATGCAGACATACAAACAGATAGCGCCGTGCGACGAGCCCACGGCACAGGAGCGC
GCGTCTCTGAGTGTCACCAAGGAAATGTACGACAACTGTGTAGTGACGCCCTGGTACAGA
GGCAGTCTACACCCCGACAGGTACATAGTGTCCAGAGTTCTGGAATACCTCACGCCGTAC
TCCAAGTTCGAGGACAACTCGTTCGAGACCTTTGCCGATTACTACAGCAACAAATACAAC
CTTGAGATCCTCGGCAGGAAGGACCAGCCGCTGCTGGAGGTCCGTAACATAAGCAGTCGT
ATGAACTGCCTGCTCCCCCGCGCGGCGACCATCCGCGGCCTGAGCGACAAGCAGCGCCGG
CTGGCGTCGCTAGCTCACGGCGACTACAAACCTAGAGAATTCACTGAACTCTTCGTGCCA
GAGTACTGTGTGCGGGCGGACTACCCCGCGCATCTATGGTACAAGGCCATCATTCTACCC
AGCATCGTCCACCGAGTCACCATGTTACTGATCGCTGAGGAGCTGCGAGTGCAGATCCTG
ACCGACACCCAGAAAAGCCAGGGCAGGCTGACTAAAGGTGTAAGTTGGCTTCCCATAGAA
GTGGATCACTTTGTTGTGAAGAGATCCTTGCTGTCCAATTTAGACGAACCTGCTCCTATA
AACAGCGTCGACAGAATAAACAACCCCATAGACGAAACGGCACAGAAACCGCCCAACATC
GTCTCCCTGAAGCAGAGCGTGTATCAACTCCAGAAGAAGAAGGTGTCCAAGAACTATCCT
TGGGACGAGAGCATGGAACCCATTGATATCGAGCGGAACCTGTCCCGGGTCACGGTTATG
GACATAGAGTGCTACGACTCCTTCGTGACGGCGCCCCTTGCTGCAAAGGAGCCCGTCTCT
CTGCTTCGGAATTCACCCAAAGTGAAGACGCCCCTCTCCACCGCCCTCCTGCCGCCGCCG
CTACGATACAAGGACACTATATCCGTTCTATCCACCGCAAGTTCCCCTCGCGGGCCCGAG
CCTCGCGAGGTGTTGAGCGCGCTCACCCTCATCAAGTCTAACGACACCTTCAACCTGGAG
CGCTCCGAGACCCTGGGCGACTCCTTCCTCAAGTTCGCAGCCAGCCTATACCTGTTCCAC
AAGTTCCCGCAGATGGACGAGGGACAACTCACCAACCTCAAGAGCCGGCTTATTGGAAAT
AGAAATCTGTATTACGCCGGCGAGCGTGCTGGGTTGGCTGGCCGTATGAAAGTGGAACAG
TTTAGTCCTCGGAGCGACTTCCTGGTGCCCGGGTTCCTCGCACCCAGCGAGCTCGTCTCA
TTCATCACAAGACGGAAGATCCGTCCGACATTCCTCATAGGGGTTCAATTCCCAGTAGAG
GACGCGCTCTCTGGGAATCTGTCCCCGGAGAGCAGATCCTTACTACAGGAGAAGTTAAAG
GACTCGGACTTGGCGGAAGAAGAACCGTTCGGTAAGGCTCAGAACGCGATGCAGAGGTAC
GTCGGCGCTCAAGCGGTCTCTGATAAGTCAGTAGCGGACTGTGTGGAGGCTCTCATAGGC
ACTTATCTCCTGAGCGGAGGCATTACGGACGCCGTGAGCATACTAGAGTGGTTCAAAATA
ATACCATCCGAGGATAAATTCTTGAGTTTTTTGACCAAGAAGGTGAATACGGTGATAAGT
GAGGGCAAGGCGACCGTCCAGGAAGTGGACTGGTTGCTTAACAGCTGTAGATCGGACATT
GAAACAATTCTGGGATACAAGTTTAAGGACCCTTCGCTCTTATTGGAGGCCCTCTCACAC
GCTTCATACATCCGTAACCGATACACGCGTTCGTACGAGCGATTGGAATTTTTGGGCGAC
GCCATTTTGGATTTCCTGATAACGGCCTACATCTACGAGAACTGCGGCGACCTCTCGCCC
GGGGACCTCACGGACCTGAGGTCGGCCCTAGTCAACAACGTCACCTTCGCCTCATACGTC
GTCAGGCTGGGGTTACACAAGTACTTCTGTTCTCAATTCAACGGCGTCCTGGAGAACGCC
ATCAAGACGTTCGTGGAGCACCAGGAGCAGTTGGACCACGTGCTGCTGGAGGACGTGCTC
TACCTCATAGAGGAAGAGGATTGTAATATAGCACAATACATCGACGTGCCCAAGGCTCTG
AGCGACATCTTCGAGTCCCTAACAGGGGCCATGTTCCTGGACAGCGGCGGGGACCTGAAG
CTCGTGTGGAAGGTCATATACAGGATCATGCACAAAGAAATACACGATTTCAGCATGAAA
GTACCCAAACAACCCGTCAGGGTGCTCATGGAGATGATACACGCCTGTCCCAGCTTCGGC
AAATCCCGCGCCACCGAGTCGGCGGTTCCCAAGATATTGGTTCCCGTGACCTTCACACAC
GCCGGCCAGCGGCAGACGGTCTATGGGGCCGGCAGTAACAAGACGCAGGCCAAGCGAGCT
GCCGCTAAGCTCGCGCTCAAGATACTCGCTACATAG
Protein sequence:
MSKRKLNNFSLSDKLKIVSGLESGKLGKQIMSESRLTESAYRKIINICQWSEGQGSIKRR
RLSEFSDVEKCLFPDITLNVSTPVSKDLVQISEDVTTFRKYTRDDNVQNCVIWCDDGMDS
GNKAGKSLILDRELEKVPSKQEALKALETLQKFYKNTAFDPTIINRINELEKYTHRLQTA
SQKKLIKYLKPHDKMDATDDEILPRLYQTQLEEIAVKKNTIIFLPTGSGKTHIAISLIKR
LRDTLQKPWGFGGKRCFFLVNTVPLVAQQKKTIERSCPVHGVAGFSGEDNVDYWNKAQWD
SELSKYQVIVMTCQILSDMLTHQYLQLKDISLLIFDECHHGVEDHPMRLIMKHFLNCPKN
EQPRVLGLTATLLNSNVKLNKIQETIRHLETTFQASIATADDMGEVAMYSTNPREQLLYY
RRPSATPAASEAVDLLRRLQQIVLQFELPNTVQKHDIELEPHQRDITGDPKKIIKAVKNM
IESMILSICDLGVYVGALGLLANIVALERRKRWASSQVEELLYTVTITAAVEARSVLLDS
MKNESGYEKIIRHSSEKTVQLLNILKEYNPRTPVRRALKVNQERNALCGLILTQQRFTAK
ILYNLLKDVAEVNKEEFGFLKHDFIVGFNISPLCSTREQHYNKKISEQALLKFKNGDLNC
LIATSVVEEGLDVPQCTLVLRYDVPLEYRSYIQSKGRARNKKANFVILVDEENRQKFNSQ
YRAFQQVESYLNGMLCGGEVRNTPSEAEVKENLNDDDCIPAYKTRNGNSLFAVSAISLLN
RYCSVLPHDQYTTILPMVIQEPAQGNKTMVTIIMPIACPIKEPVQGRPMSSVKNAKRSAA
LNVCIKLHKAGELDYETLLPKVKGLIDFSTTDVSSCFPNWRDETEVSDEGPPGTKKRVRK
HPVHYPKCLDGPKTRDELTKCYLHVIKLETAFDEPSDAREKALYDMLRRKEGYGFITFDR
LPELCAFPMFLTVGEVRTTLQVNYAAIILDTSHLELIKQFHFFIFDQVLEIAKKFLVHDG
RVNNLYAVPLKYDNGYDIDWNVMQTYKQIAPCDEPTAQERASLSVTKEMYDNCVVTPWYR
GSLHPDRYIVSRVLEYLTPYSKFEDNSFETFADYYSNKYNLEILGRKDQPLLEVRNISSR
MNCLLPRAATIRGLSDKQRRLASLAHGDYKPREFTELFVPEYCVRADYPAHLWYKAIILP
SIVHRVTMLLIAEELRVQILTDTQKSQGRLTKGVSWLPIEVDHFVVKRSLLSNLDEPAPI
NSVDRINNPIDETAQKPPNIVSLKQSVYQLQKKKVSKNYPWDESMEPIDIERNLSRVTVM
DIECYDSFVTAPLAAKEPVSLLRNSPKVKTPLSTALLPPPLRYKDTISVLSTASSPRGPE
PREVLSALTLIKSNDTFNLERSETLGDSFLKFAASLYLFHKFPQMDEGQLTNLKSRLIGN
RNLYYAGERAGLAGRMKVEQFSPRSDFLVPGFLAPSELVSFITRRKIRPTFLIGVQFPVE
DALSGNLSPESRSLLQEKLKDSDLAEEEPFGKAQNAMQRYVGAQAVSDKSVADCVEALIG
TYLLSGGITDAVSILEWFKIIPSEDKFLSFLTKKVNTVISEGKATVQEVDWLLNSCRSDI
ETILGYKFKDPSLLLEALSHASYIRNRYTRSYERLEFLGDAILDFLITAYIYENCGDLSP
GDLTDLRSALVNNVTFASYVVRLGLHKYFCSQFNGVLENAIKTFVEHQEQLDHVLLEDVL
YLIEEEDCNIAQYIDVPKALSDIFESLTGAMFLDSGGDLKLVWKVIYRIMHKEIHDFSMK
VPKQPVRVLMEMIHACPSFGKSRATESAVPKILVPVTFTHAGQRQTVYGAGSNKTQAKRA
AAKLALKILAT