| New model in OGS2.0 | DPOGS207273 |
|---|---|
| Genomic Position | scaffold245:- 42743-47635 |
| See gene structure | |
| CDS Length | 1446 |
| Paired RNAseq reads | 2084 |
| Single RNAseq reads | 5192 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA011747 (2e-168) |
| Best Drosophila hit | Rpd3 (0.0) |
| Best Human hit | histone deacetylase 2 (0.0) |
| Best NR hit (blastp) | histone deacetylase Rpd3 [Culex quinquefasciatus] (0.0) |
| Best NR hit (blastx) | histone deacetylase Rpd3 [Culex quinquefasciatus] (0.0) |
| GeneOntology terms | GO:0004407 histone deacetylase activity GO:0007350 blastoderm segmentation GO:0016575 histone deacetylation GO:0005634 nucleus GO:0016581 NuRD complex GO:0016481 negative regulation of transcription GO:0016580 Sin3 complex GO:0000785 chromatin GO:0016458 gene silencing GO:0006342 chromatin silencing GO:0048477 oogenesis GO:0003714 transcription corepressor activity GO:0035098 ESC/E(Z) complex GO:0008340 determination of adult lifespan GO:0005515 protein binding GO:0031523 Myb complex GO:0007517 muscle organ development GO:0048813 dendrite morphogenesis GO:0045449 regulation of transcription GO:0006099 tricarboxylic acid cycle GO:0022904 respiratory electron transport chain GO:0005705 polytene chromosome interband |
| InterPro families | IPR003084 Histone deacetylase IPR000286 Histone deacetylase superfamily |
| Orthology group | MCL10771 |
Nucleotide sequence:
ATGCAACCCCATAGTAAGAAAAGAGTGTGCTATTACTACGATAGTGATATCGGTAATTAC
TACTATGGACAGGGACATCCCATGAAGCCTCATCGTATACGTATGACTCATAATTTATTG
TTAAATTATGGACTTTACAGAAAAATGGAAATCTATAGACCACACAAAGCGACTGCTGAC
GAGATGACCAAGTTCCACTCAGACGACTACATCCGCTTCTTAAGATCCATCAGACCGGAT
AATATGTCAGAATATAACAAACAGATGCAAAGATTCAATGTTGGTGAAGACTGTCCCGTT
TTTGATGGACTGTATGAGTTCTGCCAGCTATCAGCGGGAGGTTCAGTAGCCGCTGCTGTC
AAATTAAACAAACAGGCATCAGAGATTTGTATCAACTGGGGAGGCGGACTCCATCATGCC
AAGAAGTCTGAAGCGTCAGGTTTTTGTTATGTAAATGATATTGTTCTTGGAATTCTTGAG
TTACTGAAGTATCACCAAAGAGTGCTTTATATTGACATTGATGTACATCACGGTGACGGG
GTCGAAGAGGCTTTTTACACTACAGATAGAGTAATGACGGTCTCCTTCCACAAGTACGGG
GAATACTTCCCTGGCACGGGTGACCTTAGAGATATCGGGGCCGGTAAAGGAAAGTACTAC
GCTGTAAACATTCCTCTGAGAGACGGTATGGACGATGAATCATATGAGTCCATCTTTGTT
CCTATCATATCCAAAGTTATGGAGACATTTCAACCCAGCGCTGTTGTCCTGCAATGCGGT
GCGGATTCATTAACAGGCGACCGACTCGGCTGCTTCAATCTAACAGTGCGTGGTCACGGC
CGTTGTGTTGAATTAGTTAAGAGATTTGGTTTACCATTCCTCCTCGTCGGCGGCGGAGGC
TACACAATCCGTAACGTATCCCGATGTTGGACGTACGAAACATCGGTGGCACTGGGCGTG
GAGATAGCTAACGAGCTGCCGTACAACGACTACTTTGAATACTTCGGACCGGACTTCAAA
CTACACATCTCTCCCAGTAATATGTCTAATCAGAACACACTGGAATATTTGGAGAAGATA
AAGAATAGACTTTTCGAGAATCTTCGCATGTTGCCTCATGCACCTGGAGTTCAAGTTCAA
GCTATACCAGAAGACGCAGTCAACGATGAGTCAGAAGACGAAGATAAAGTGGACAAAGAC
GAACGACTACCACAGAGTGAAAAAGACAAGCGCATCACGAACGACGGCGAGCTGTCAGAC
TCCGAGGACGAGGGACGGGACGGGGACGGCAGGAGAGACAACCGCTCGTACCGCGCGCCA
AGGAAACGACCGCGCCTCGACAAGGACGCCGCTAAAGACGACGGGAAAGCCGAGGATTCA
AAGGACGAAGTGAAAAACTTGAGCAATATGGAGGAACCAAAGAAAGAGCTGCCGCCGAAC
GCCTGA
Protein sequence:
MQPHSKKRVCYYYDSDIGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKATAD
EMTKFHSDDYIRFLRSIRPDNMSEYNKQMQRFNVGEDCPVFDGLYEFCQLSAGGSVAAAV
KLNKQASEICINWGGGLHHAKKSEASGFCYVNDIVLGILELLKYHQRVLYIDIDVHHGDG
VEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNIPLRDGMDDESYESIFV
PIISKVMETFQPSAVVLQCGADSLTGDRLGCFNLTVRGHGRCVELVKRFGLPFLLVGGGG
YTIRNVSRCWTYETSVALGVEIANELPYNDYFEYFGPDFKLHISPSNMSNQNTLEYLEKI
KNRLFENLRMLPHAPGVQVQAIPEDAVNDESEDEDKVDKDERLPQSEKDKRITNDGELSD
SEDEGRDGDGRRDNRSYRAPRKRPRLDKDAAKDDGKAEDSKDEVKNLSNMEEPKKELPPN
A